Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1023 ATGCAGCAAATCAGGCAGTTAAACCAATCTACTCCTCAGGCTGGAGGTCCAATTAATGAAGGGGGTTCAGGAAATTATGCCAGATCTCAAGGTTCACCTGCTCAGATGCCTCAACAACAAAGCAAGTTTACCAAACAACAGCTTCATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGCTGAAGAAAGGAGAAGGTACTCTACCCCAAGAACTTCTTCGGGCTATTGCTCCACCTCCTCTTGAGACGCAGATGCAACCCCCAAATCATCCTTCTGGAGGACAAATTCAAGACAAATCTACTGGAAGTATCGTGGCTGAACAACCAAGTTACACCGAGTCCAATACCAAGGATTCACAATCTATCCCGACTGTTAATGGTCAGAGTTCTTTAAAGCAGCAATCATTTGGCAGAGATGAGAAATCCATTATGCCTTCAGTTCATATGCAAGCTGTTGTGCCACCTGCATCAAAGGAATCTGCACCAATGTTATCTGCTGGAAAGGAACAGCAAAAGTCAATTGCAAGCTCTGCTAAGTCAGACCAGGACAATGAACATGGAGATAACAGAACTCCTATTAGAAGCGAGTTAGCACTAGATAGGGGAAAGGCTATTGCACCGCAGCCTTCTGTGCCTGACTCAATGCAAATGAAGAAACCTGAACAAGTAAGCACTATGTCTCAGCCAAAGGATGTGGGTTCCACCAGAAAATATCATGGACCCCTATTTGATTTTCCTTTCTTCACTAGGAAACATGACTCCTTTGGGTCCTCGATGATGGTAAACAATAACAATAATTTGTCACTGGCATATGATGTCAACGAGATTCTTTTTGAGGAAGGCATGGAAGTACTTACCAAGAAACGGACAGAAAAATTGAAGAAGATCGAAGGTTTATTAGCAGTAAACTTAGAGAGGAAAAGAATTAGACCTGATCTTGTTTTGAAGCTGCAAATTGAAGAGAAAAAGCTTCGCCTTTTAGATCTACAGGCACGTTTAAGGAATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGCTCTGTGAGCGTCAGCGTATGGAGCTTGCTAGACAAGTGCAGACATCTCAGAGAGCTTTAAGGGAGAAGCAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACATTGGGCTATTCGTGATGCCCGTACTGCTCGCAACAGGGGGGTGGCCAAATATCATGAGAGGATGTTGAGGGAGTTCTCAAAACGTAAAGATGATGACAGGGACAAAAGGATGGAAGCGTTGAAAAACAATGATGTTGACCGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATGCCCGGTGATGCTGCAGAGAGATATGCTGTTCTTTCATCTTTCTTAAGTCAAACAGAAGAGTATCTACATAAATTAGGAAGTAAGATAACAGCTACCAAAAATCAACAGGAAGTGGAAGAGGCAGCAAAAGCTGCTGCAGCTGCAGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCTGCAACTTGTGCCGGGGAGGAAATGATGATTAGAAATCATTTTATGGAGATTAATACTCCTAGACATAGTTCATCAGTTAACAAATACTACAGTCTTGCTCATGCTGTGAATGAAACGGTTATTAGGCAACCTTCAATGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCCTACTTGATGGAGTTTAAGGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGCTTTATAATTGGTTACCATCTGTGTCATGCATCTTTTATGTTGGAATGAAGGATCAAAGGGCAAAATTATTTTCTCAAGAGGTTTCTGCTATGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGAGATTCGGTTCTTGCCCGTGATCTTGACAAATATCGTTGTCAAAGACGCCTGCTTTTGACTGGAACACCATTGCAGGTATGCTTGTCTTTGATCCATTGTGTTGTTGTAAGCAGTGGTGTCTGTAAGTTTTCATTTGTCTCTGCTGTGTACCACATAGACCAAATGCTATCAGACCAGTTCAAGTATGCGTTTTTATATTTTCTTCTGCAGCTTGTGTTTCCCTTTATAACTAAATTCACCTATGTTCCTTTACATGTCAAATATCTGTTTGCAAAGAGGCACATGACAGGAGAGGGCTGTAAAAATACTGCCAGCTTGATGGGCGAGAAATAA 2448 0.4154 MQQIRQLNQSTPQAGGPINEGGSGNYARSQGSPAQMPQQQSKFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLETQMQPPNHPSGGQIQDKSTGSIVAEQPSYTESNTKDSQSIPTVNGQSSLKQQSFGRDEKSIMPSVHMQAVVPPASKESAPMLSAGKEQQKSIASSAKSDQDNEHGDNRTPIRSELALDRGKAIAPQPSVPDSMQMKKPEQVSTMSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMVNNNNNLSLAYDVNEILFEEGMEVLTKKRTEKLKKIEGLLAVNLERKRIRPDLVLKLQIEEKKLRLLDLQARLRNEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQTSQRALREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRDKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYAVLSSFLSQTEEYLHKLGSKITATKNQQEVEEAAKAAAAAARLQGLSEEEVRAAATCAGEEMMIRNHFMEINTPRHSSSVNKYYSLAHAVNETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGMKDQRAKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDKYRCQRRLLLTGTPLQVCLSLIHCVVVSSGVCKFSFVSAVYHIDQMLSDQFKYAFLYFLLQLVFPFITKFTYVPLHVKYLFAKRHMTGEGCKNTASLMGEK* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1023 815 PANTHER ATP-DEPENDENT HELICASE BRM 23 733 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Lan17g1023 815 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 581 730 IPR014001 -
Lan17g1023 815 Gene3D - 370 444 - -
Lan17g1023 815 Pfam QLQ 43 76 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lan17g1023 815 PANTHER SNF2/RAD54 HELICASE FAMILY 23 733 - -
Lan17g1023 815 MobiDBLite consensus disorder prediction 164 178 - -
Lan17g1023 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 730 IPR027417 -
Lan17g1023 815 SMART QLQ_2 41 78 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lan17g1023 815 SMART ultradead3 565 754 IPR014001 -
Lan17g1023 815 MobiDBLite consensus disorder prediction 63 138 - -
Lan17g1023 815 MobiDBLite consensus disorder prediction 1 45 - -
Lan17g1023 815 MobiDBLite consensus disorder prediction 155 191 - -
Lan17g1023 815 Coils Coil 319 343 - -
Lan17g1023 815 Gene3D - 538 751 IPR038718 -
Lan17g1023 815 Pfam SNF2-related domain 572 733 IPR000330 GO:0005524|GO:0140658
Lan17g1023 815 MobiDBLite consensus disorder prediction 87 138 - -
Lan17g1023 815 ProSiteProfiles QLQ domain profile. 42 78 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1023 Lan-Chr17 15180393 15184021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1023 590 791 RAD5 or RAD16-like Gene Family AT1G02670 27.570 4.00e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan17g1023 SNF2_N 2.6e-36 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1023 - - lang:109331812 1571.99