Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1001 ATGGCTCATGATCATGATGCTAGTATCTCAGGTCTTCACCTTGTTCTAGGGTTAGCTTTAACTAGTACAACACAAAAAGAAACTTTCACTCCATCACCACAATCCAACAAGGTTGTCGATGATCATTTTTCACTTATTAGGACAACATCAAAGAAACCCTACTATGAGGATGAACCATCTTTAACGTTGGGCCTTTCTGGTGAGAGTTACCAGTTTAATCAAGTTCCTCTTGACTTGTCCACACAGACTTCACCTCTCAGCGTGGTTTCATCTTTCTCGAGTGGAAGGGTGAAGAGGGAGAGAGAGCTTAGCAGTGAAGAAGTAGAGGCAACAGAGATAGAGATAGAGAGGGTTTCTTCACGAATCAGTGATGAAGATGAAGATGGAACCAATGTTAGGAAGAAGCTTAGGCTTAACAAAGAACAATCTGCTCTATTAGAAGAGAGTTTCAAGCAACATAGTACTCTCAATCCGAAACAAAAGCAAGCTTTAGCTAAACACTTAAATCTACTGCCACGACAAGTTGAGGTGTGGTTTCAGAATCGCAGAGCCAGAACAAAACTGAAGCAGACAGAAGTGGACTACGAGTTCCTAAAAAAATGTTGTGAAACGTTGAAAGATGAGAACATGAGGCTACAGAAGGAGCTTCAAGAAATGAAAGCATTGAAACTAGCACAATCCGTATACATGCCTATGCCTACAGCCACCCTCACTATGTGCCCTTCTTGTGAAAGGCTCAATCATGGGGTCAGTGGTGGCTCTTCCAATAAGAGTACCCCATTCTCCATGTCCATGGCTCCTAAGCCTCACTTCTATAACCCCTACACCAATCCTTCAGCAGCATGTTGA 849 0.4264 MAHDHDASISGLHLVLGLALTSTTQKETFTPSPQSNKVVDDHFSLIRTTSKKPYYEDEPSLTLGLSGESYQFNQVPLDLSTQTSPLSVVSSFSSGRVKRERELSSEEVEATEIEIERVSSRISDEDEDGTNVRKKLRLNKEQSALLEESFKQHSTLNPKQKQALAKHLNLLPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCETLKDENMRLQKELQEMKALKLAQSVYMPMPTATLTMCPSCERLNHGVSGGSSNKSTPFSMSMAPKPHFYNPYTNPSAAC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1001 282 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Lan17g1001 282 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Lan17g1001 282 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Lan17g1001 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 12 282 - -
Lan17g1001 282 SUPERFAMILY Homeodomain-like 131 198 IPR009057 -
Lan17g1001 282 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Lan17g1001 282 Gene3D - 138 187 - -
Lan17g1001 282 Coils Coil 188 225 - -
Lan17g1001 282 CDD homeodomain 133 190 IPR001356 GO:0003677
Lan17g1001 282 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Lan17g1001 282 SMART HOX_1 131 193 IPR001356 GO:0003677
Lan17g1001 282 PANTHER - 12 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1001 Lan-Chr17 14606649 14609407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1001 6 282 Homeobox Transcription Factor Family AT4G37790 57.292 1.36e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan17g1001 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1001 K09338 - gmx:100784129 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0913 6 8515355 8517320 Lan17g1001 17 14606649 14609407 LSH
Lan18g0960 18 14764695 14766314 Lan17g1001 17 14606649 14609407 PCT
Lan6g0289 6 2216273 2218042 Lan17g1001 17 14606649 14609407 PCT
Lan17g1001 17 14606649 14609407 Lan18g0960 18 14764695 14766314 PCT
Lan17g1001 17 14606649 14609407 Lan6g0289 6 2216273 2218042 PCT