Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0994 ATGGAGGAATCAAACACACCGATAGACGCATCAGCATCAACATGTTGGTTATCTGATTTGGAAATAGATGATTACAATTTCTTTCTAGAGGAATGCAACTTGAACAACTTGTTTGATGTTGATAATGAAGAGTTTCTTTCACATGACATAGCAAGTGCAATGCAGGGGAACACAAGTAGCAACACATCCAGCATCACTGAAAATTCATCACTAAATTTTTTTCCCTCTTCCTCAATTTCCTATTTTCCGTCTCAGATTTTGTCTTTTGACAACACCACCACCCAGTTTTATGATTTTGACTGTACCTTAAACCCTTCAAAACATATCTCAGCTAAGACCACAAAAGGGTCCTCAAAAAATCAAAACTTTGGAACAAAAACCACACTTGGTAAAAGATCTGCAGCTCGTACTTATGATCACATCATTGCTGAGAGAAAGCGAAGGGAGAAGCTTAGTCAGAGCCTCATTGCTCTTGCAGCCCTTATTCCTGACCTAAAGAAGGTAGACAAGGCTTCTGTACTAGGGAATGCTATCAAGTATATTAAAGAACTTAAAGAACGTGTATCAATTTTAGAAGAAGACAGCAAAAGGACAAGGGTTGTGGTCCTAAAGGATCCAGAACTGAATGGAGAAAATTATGATTCCTCATCATGTGAAGAGGGAAGCATTGAAAATTCCTGTGGTAGTGAACCACTCCTCCAAGTGAAAGCAAGAATGTCAGGGCAAGAGGTGCTACTTCGGATCCATTGTCAGAAGCAAAAGGATCTTCTGGTCAAAATATTGGCACAAATTCAAAGTCTGAACCTCTTTGTTGTCCATAGCAGTGTCTTGCCATTTGGAGATTATTCTCTTGATATAACCTTCATTGCTCAGATGGGTGAAGGTTACAATTTGACCGTGGAGGATCTTGTAAAGAACATACACGCGGCTTCAATGAAGTGTATGTCATAA 951 0.3933 MEESNTPIDASASTCWLSDLEIDDYNFFLEECNLNNLFDVDNEEFLSHDIASAMQGNTSSNTSSITENSSLNFFPSSSISYFPSQILSFDNTTTQFYDFDCTLNPSKHISAKTTKGSSKNQNFGTKTTLGKRSAARTYDHIIAERKRREKLSQSLIALAALIPDLKKVDKASVLGNAIKYIKELKERVSILEEDSKRTRVVVLKDPELNGENYDSSSCEEGSIENSCGSEPLLQVKARMSGQEVLLRIHCQKQKDLLVKILAQIQSLNLFVVHSSVLPFGDYSLDITFIAQMGEGYNLTVEDLVKNIHAASMKCMS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0994 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 199 IPR036638 GO:0046983
Lan17g0994 316 Pfam Helix-loop-helix DNA-binding domain 140 185 IPR011598 GO:0046983
Lan17g0994 316 SMART finulus 141 190 IPR011598 GO:0046983
Lan17g0994 316 Coils Coil 174 201 - -
Lan17g0994 316 Gene3D - 128 200 IPR036638 GO:0046983
Lan17g0994 316 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 65 316 - -
Lan17g0994 316 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 8 70 - -
Lan17g0994 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Lan17g0994 316 PANTHER BHLH TRANSCRIPTION FACTOR 65 316 - -
Lan17g0994 316 PANTHER BHLH TRANSCRIPTION FACTOR 8 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0994 Lan-Chr17 14320597 14324380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0994 13 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.731 6.96e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g0994 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0994 - - lang:109330753 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0297 6 2276081 2278140 Lan17g0994 17 14320597 14324380 PCT
Lan17g0994 17 14320597 14324380 Lan6g0297 6 2276081 2278140 PCT