Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0993 ATGTCTATGGCTGGTTTGGATTTAGGAACTGTTTCACGCTATGCTCAAAACCTTCACAGAGAAAACTTGCACCATCACCAACATCAACACCAAGATTCCGAAGAACAAGACCATCACAATCATCACCATCGTGGTGCAGGTGCAGATGCGTTTTCCACCGAAGAAGATGATAAGAGCCATGGTCTAGAGCTAGGGTCGGCCTCAGGCAGCGGAGATGTCATCGGCCGCCGTCCACGAGGCCGACCTCCAGGCTCCAAGAACAAGGCAAAGCCACCGGTGATAATCACAAGAGAAAGCGCCAACACACTAAGGGCCCATATTCTTGAAGTAAGTAGCGGCGCAGACGTGTTCGATTGCGTCGCTACCTATGCACGCCGTCGCCAAAGAGGGATCTGCATCCTCAGTGGCAATGGCACTGTAACTAATGTAAGCCTCCGGCAGCCATCGGCTGCAGGAGCTGTGGTTACACTCCATGGAAGATTTGAGATATTGTCCCTCTCGGGATCATTTCTTCCACCTCCAGCTCCCCCAGGTGCTACTAGTCTCACCATCTACCTCGCCGGAGGCCAAGGGCAGGTGGTGGGAGGAAGCGTCGTGGGGGAACTGATGGCGGCAGGACCGGTGATAGTAATTGCTGCATCATTTACCAACGTGGCTTATGAAAGGTTGCCGTTGGAGGAGGATGAACAACAGCTTCAGATGCTGCCACCTATTTCTCAGGGTTCTGATGGTGGTGTTGGAAATAACCCTTTTCCAGACCCTTCTTCTGGTTTGCCTTTCTTCAATTTGCCGTTGAATATGCAAAATGTTCAGATGCCAGTAAATGGTTGGGCTGGAAACTCAGCTCCACGTCCTCCATTTTGA 864 0.515 MSMAGLDLGTVSRYAQNLHRENLHHHQHQHQDSEEQDHHNHHHRGAGADAFSTEEDDKSHGLELGSASGSGDVIGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVSSGADVFDCVATYARRRQRGICILSGNGTVTNVSLRQPSAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELMAAGPVIVIAASFTNVAYERLPLEEDEQQLQMLPPISQGSDGGVGNNPFPDPSSGLPFFNLPLNMQNVQMPVNGWAGNSAPRPPF* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0993 287 MobiDBLite consensus disorder prediction 23 62 - -
Lan17g0993 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 3 287 - -
Lan17g0993 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 233 - -
Lan17g0993 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 217 IPR005175 -
Lan17g0993 287 ProSiteProfiles PPC domain profile profile. 100 238 IPR005175 -
Lan17g0993 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 287 IPR014476 GO:0003680
Lan17g0993 287 Gene3D - 103 235 - -
Lan17g0993 287 MobiDBLite consensus disorder prediction 23 92 - -
Lan17g0993 287 CDD DUF296 104 187 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0993 Lan-Chr17 14245770 14247344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0993 3 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.744 6.82e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0993 - - vvi:100262516 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0370 17 2738336 2739683 Lan17g0993 17 14245770 14247344 PCT
Lan18g0950 18 14710116 14711559 Lan17g0993 17 14245770 14247344 PCT
Lan6g0301 6 2309490 2310744 Lan17g0993 17 14245770 14247344 PCT
Lan17g0993 17 14245770 14247344 Lan17g0370 17 2738336 2739683 PCT
Lan17g0993 17 14245770 14247344 Lan18g0950 18 14710116 14711559 PCT
Lan17g0993 17 14245770 14247344 Lan6g0301 6 2309490 2310744 PCT