Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0991 ATGCCTGTCCCACTTGCACCTTATCCAACACCACCAGGAACATCAACAAATGGTGCACAGAGTCAACTTGTCTGTTCTGGTTGTAGAAACCTTCTACTCTATCCTGTTGTAGCCACCTCAGTGTGCTGTTCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCCGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGCTGCCATACTTTACTTATGTACATTCGTGGAGCAACAAGTGTGCAATGCTCTTGTTGTCACACCATCAATCTAGCTTTGGAAGCAAACCAGGTGGCACATGTCAATTGTGGGAACTGCAGGATGCTACTAATGTACCAATATGGAGCAAGATCCGTGAAATGCGCAGTTTGCAATTTTGTAACATCTGTTGGGGCCTCAGCAAGCACCACAGAGCAGAAGCTCAGCACCTAA 429 0.4732 MPVPLAPYPTPPGTSTNGAQSQLVCSGCRNLLLYPVVATSVCCSVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTINLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKLST* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0991 142 SUPERFAMILY Multiheme cytochromes 25 123 IPR036280 -
Lan17g0991 142 PANTHER PROTEIN LSD1 1 139 IPR040319 -
Lan17g0991 142 Pfam LSD1 zinc finger 64 88 IPR005735 -
Lan17g0991 142 Pfam LSD1 zinc finger 25 49 IPR005735 -
Lan17g0991 142 Pfam LSD1 zinc finger 102 126 IPR005735 -
Lan17g0991 142 PANTHER PROTEIN LOL1 1 139 - -
Lan17g0991 142 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 22 52 IPR005735 -
Lan17g0991 142 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Lan17g0991 142 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 99 129 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0991 Lan-Chr17 14189816 14192270 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lan17g0991 zf-LSD1 8.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0991 - - cit:102618163 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0923 6 8616570 8619151 Lan17g0991 17 14189816 14192270 LSH
Lan17g0373 17 2766687 2768989 Lan17g0991 17 14189816 14192270 PCT
Lan18g0946 18 14687798 14690109 Lan17g0991 17 14189816 14192270 PCT
Lan17g0991 17 14189816 14192270 Lan17g0373 17 2766687 2768989 PCT
Lan17g0991 17 14189816 14192270 Lan18g0946 18 14687798 14690109 PCT