Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0990 ATGGGTTTCAATTCAAGGGAGAAAAATATGAGATCAAATCGAAGAGCTAAACCATCATCATCATCATCATCAACAGCAGCAGCAGCAGCAGCACCAAAACCTGCATTGGATGATCCTATATCAAAGTCCAGTGCTGATTCTCCTCAACAAAACCCTAATCCTAATAGTGGTAGTGATGAAGCTGACTGGAGTTGCTGCACTGAGGAACAAATGGAGGAGTTTCTGGTGTTGAAATTGGAGTTTATATACAATCAAGCGATTTCAAAGCTTGTTGATTTGGGTTATAGTGAAGATATTGCTCTTAAGGCCGTTTTGAGCAATGGGCATTGCTATGGTGGCATGGATTTGTTGGATAACATTTTGAGCAACTCCTTGCAGGCTTTGGATAGTAGCAAGGGTGATACAAAAGAGTCTAATGCTGTTTTCTCTGATTTGATGCAGTTAGAGAAGTATGCTTTGACGGGTTTGGTGTGTTTGTTGCAACAACTTAGGCCTAATATGAGTAAAGGTCATGCACTGTGGTGTTTGCTCGTGAGTGATCTTCACATAGGTAAGGCTAGCACTATGGAGATTCCGGTGCCCGATATTGGGTACACTGATCCTGATCCTGATGTTCTGGCTTCGTCTGCTGCTGTGGCTTCGGATGCATCTTCTCATGGAAGCAGTGGTGGCACGGAGATAAATTTGAAGTTGCAAAGGGAAATTGAATTTCCGAAGAGGTTTAATCTTTCACCTTCGATGATGTCTTTACTGAAGAAAAATGCTGCTATGTTTGCTGCTGGTTATAGGGCAAACTCGAAAAGATCGCAGACACTGCCGGCGAAGGACACTTCTGGTAGTAGCATTGCCATGTCGAATTTAGAGTCTACGGCTGTATCTGGGGATCCCATTGAAAAGTCTAGTGTTGGCCAATGTCCTGATGACCAAGATATTATCAAAGATCTGGTAAGTAAATTGTGTGATCTAAGTCTTCGTGAGAAGGGGGTTGTGGCAAAAGATCAGAGGGATCAAGTCATAATCAATCTATTGTATCGGATTAAGGATCTTGAAAAACAGGTCGAGGAGCGAAAAGAATGGGCTCAACAGAAGGCAGTGCAAGCAGCAAGAAAACTAACTAGTGATATGACTGAGCTCAAAACCTTACGGATGGCAAAAGAGGAGGTTCAAAGGTTGAAGCAAGGGAAACAGTCGATTGATGACGCGACCATGAAGAAACTGTCAGAGATGGAGAGTGGTTTGAGACATGCTAGTGTTGAAGTGGACCGTGCAAATGTAGCTGTGAGGACACTAGAGCAAGAGAATGCAGAACTCAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCGGAGACAACGAAAGCTTGCAAAGAAGTTGCAAAACGGGAGAAAAAGTTGCTGAAGAAGCTTCAGACTTGGGAGAAACAGAAAGCTAAGCTAGAGAAGGAAATTGCTGATGAAAAAGTGAAGATATTGCAGACACAAGAAGAATTGGATCAGATTAGACAGAGTCAAAAAAATGCTGAGATCAAGTGGAAGGAGGAGATGGAGGCTAAAGAGAAAGCCGTAGGACTGGTTGAGGAGGTACGCCGTTCTAAGGAAGCAGATGAAACCAATAATAAGAGGAGGCTTGAGGCTTTACGGGTAAGGATTGAGATAGATTTCCAGCGCTACAAGGATGATGTACTAAGACTTGAGCAGGAACTTTCGCGTCTTCAATCATGTGTTAAGTCCCCTAAGTTGCAATCAAATGCTTCATCTGGAAATAAGTCTAAGGGTCCAGAAACAGAGACAATTGCTAAGCTGCTTCAAGAATTGGAAAACCTCGAGGGCTTTTCAGAGAAAAATGAAGTCAATGGTGGAAGAGAATGCATTGTATGCAAGAAAGGTGAAGTCTCTGTTGTTTTCTTGCCATGTACACACCAAGTTATGTGTGCTACTTGTGGTGATGAGTATGGAAGAAATAGTCAAGCTGCTTGTCCTTGCTGCCGGGTTCCGATCCGACAGAAAATCCATGTATTTGGGGCAAGTTCTTAG 2034 0.4302 MGFNSREKNMRSNRRAKPSSSSSSTAAAAAAPKPALDDPISKSSADSPQQNPNPNSGSDEADWSCCTEEQMEEFLVLKLEFIYNQAISKLVDLGYSEDIALKAVLSNGHCYGGMDLLDNILSNSLQALDSSKGDTKESNAVFSDLMQLEKYALTGLVCLLQQLRPNMSKGHALWCLLVSDLHIGKASTMEIPVPDIGYTDPDPDVLASSAAVASDASSHGSSGGTEINLKLQREIEFPKRFNLSPSMMSLLKKNAAMFAAGYRANSKRSQTLPAKDTSGSSIAMSNLESTAVSGDPIEKSSVGQCPDDQDIIKDLVSKLCDLSLREKGVVAKDQRDQVIINLLYRIKDLEKQVEERKEWAQQKAVQAARKLTSDMTELKTLRMAKEEVQRLKQGKQSIDDATMKKLSEMESGLRHASVEVDRANVAVRTLEQENAELKAEMEASKLSASETTKACKEVAKREKKLLKKLQTWEKQKAKLEKEIADEKVKILQTQEELDQIRQSQKNAEIKWKEEMEAKEKAVGLVEEVRRSKEADETNNKRRLEALRVRIEIDFQRYKDDVLRLEQELSRLQSCVKSPKLQSNASSGNKSKGPETETIAKLLQELENLEGFSEKNEVNGGRECIVCKKGEVSVVFLPCTHQVMCATCGDEYGRNSQAACPCCRVPIRQKIHVFGASS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0990 677 Coils Coil 547 574 - -
Lan17g0990 677 Coils Coil 413 447 - -
Lan17g0990 677 Coils Coil 455 510 - -
Lan17g0990 677 PANTHER OS05G0141500 PROTEIN 1 676 IPR046934 -
Lan17g0990 677 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 676 - -
Lan17g0990 677 SUPERFAMILY RING/U-box 622 670 - -
Lan17g0990 677 Pfam Zinc finger, C3HC4 type (RING finger) 621 668 - -
Lan17g0990 677 Coils Coil 381 401 - -
Lan17g0990 677 MobiDBLite consensus disorder prediction 42 63 - -
Lan17g0990 677 ProSiteProfiles Zinc finger RING-type profile. 623 663 IPR001841 -
Lan17g0990 677 MobiDBLite consensus disorder prediction 1 63 - -
Lan17g0990 677 Pfam Family of unknown function (DUF6592) 78 188 IPR046527 -
Lan17g0990 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 674 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0990 Lan-Chr17 14021724 14034097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0990 623 673 C3H Transcription Factor Family AT1G73950 41.176 6.26e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0990 - - adu:107483267 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0374 17 2772338 2775942 Lan17g0990 17 14021724 14034097 PCT
Lan6g0304 6 2326492 2330108 Lan17g0990 17 14021724 14034097 PCT
Lan17g0990 17 14021724 14034097 Lan17g0374 17 2772338 2775942 PCT
Lan17g0990 17 14021724 14034097 Lan6g0304 6 2326492 2330108 PCT