Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0976 ATGAAGTGTTTCTTCTTCAAAGACAAATCCAAATCAGCCCCAGAGTTGCAAAACCAAAGCAACAAGAAGAAAAACCCGGGTTTGAACCGTGCTACAAACTCAACAGGTTCAATATCATCATCACCAAAGAGTGTAAAAGAGTTGTATAAGGAGAAAGAGCACAACTTTAGAGTTTTTACTTTGAAAGAGCTAAGAGATGCTACAAATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGTTTTGGAAGTGTATATAAAGGATCCATTAAGCCTCAAGATGGAGAAGGTGATCCAATTGTAGTTGCTATCAAAAGGCTTAACACCCGTGGCTTTCAGGGTCATAAAGAGTGGCTTGCAGAAGTGCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCCGTTGATGGAGAAAGAGGAATCCAAAGGCTGTTGGTGTATGAGTTCATGCCGAACAGGAGCATGGAAGATCACCTTTTCAATAAAGCTTTCCCCCCGTTGCCTTGGAAAACAAGATTGGAGATCATGCTTGGTACTGCTCAAGGATTAGCTTATCTACACGAGGGATTGGAAATTCCGGTGATCTACCGAGATTTTAAATCATCAAATATTCTGCTGGACACGGATTTCCACCCAAAGCTGTCAGATTTTGGTCTTGCTAGGGAAGGCCCACAAGGTGACCAGACTCATGTATCTACGGCAGTAGTTGGGACACATGGATATGCTGCACCAGAGTATATTGAAACAGGCCATCTCAAGGTTCAGAGTGACATGTATAGTTTTGGTGTTGTACTCTACGAGATCCTCACAGGAAGGCGGTCATTGGAAAGAAACCGACCAGCAGCAGAACAAAAGCTTCTAGACTGGGTTAAACAGTATCCTGCTGACACCAGTAGATTCAGCATGATAATGGACCCGCGTCTCAGGAACCAATATTCTCCCGGTGCAGCTCGCAAAATAGCCAAGTTGGCCGATAACTGCTTAAAGAAGATTCCTGAAGATAGACCATCCATGAGTCAAATAGTTGAAACTTTGAAGGAAGCATTGCAATATTCAGATGCATCAAGCAGTTCTCAGAATCCTGCCGAATCTTCACGGTCTAAAGCGGTTCAAAAAAGTAAATATAAGCAGTAA 1155 0.426 MKCFFFKDKSKSAPELQNQSNKKKNPGLNRATNSTGSISSSPKSVKELYKEKEHNFRVFTLKELRDATNGFNRMLKIGEGGFGSVYKGSIKPQDGEGDPIVVAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSMEDHLFNKAFPPLPWKTRLEIMLGTAQGLAYLHEGLEIPVIYRDFKSSNILLDTDFHPKLSDFGLAREGPQGDQTHVSTAVVGTHGYAAPEYIETGHLKVQSDMYSFGVVLYEILTGRRSLERNRPAAEQKLLDWVKQYPADTSRFSMIMDPRLRNQYSPGAARKIAKLADNCLKKIPEDRPSMSQIVETLKEALQYSDASSSSQNPAESSRSKAVQKSKYKQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0976 384 MobiDBLite consensus disorder prediction 357 375 - -
Lan17g0976 384 Gene3D Phosphorylase Kinase; domain 1 50 156 - -
Lan17g0976 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lan17g0976 384 Pfam Protein kinase domain 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0976 384 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 13 377 - -
Lan17g0976 384 CDD STKc_IRAK 77 354 - -
Lan17g0976 384 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0976 384 SUPERFAMILY Protein kinase-like (PK-like) 53 352 IPR011009 -
Lan17g0976 384 Gene3D Transferase(Phosphotransferase) domain 1 157 381 - -
Lan17g0976 384 PANTHER OS01G0588500 PROTEIN-RELATED 13 377 - -
Lan17g0976 384 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524
Lan17g0976 384 MobiDBLite consensus disorder prediction 357 384 - -
Lan17g0976 384 MobiDBLite consensus disorder prediction 12 44 - -
Lan17g0976 384 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0976 Lan-Chr17 13774223 13777773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0976 3 380 Glycoside Hydrolase AT3G07070 42.455 1.71e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan17g0976 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0976 - K00924 gmx:100305403 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0942 6 8844342 8847394 Lan17g0976 17 13774223 13777773 LSH
Lan18g0370 18 6976449 6982980 Lan17g0976 17 13774223 13777773 LSH
Lan17g0389 17 2912823 2915555 Lan17g0976 17 13774223 13777773 PCT
Lan18g0370 18 6976449 6982980 Lan17g0976 17 13774223 13777773 PCT
Lan17g0976 17 13774223 13777773 Lan17g0389 17 2912823 2915555 PCT
Lan17g0976 17 13774223 13777773 Lan18g0370 18 6976449 6982980 PCT