Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0966 ATGAAACTTAGTTTTAAGCATCAAATTGGCCTTGTTTGTGTCACACTACTCTTACATGCACTATGCATAAACTCTGAGGACTATTTTACTGAGTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAACCCAAGAGGAGCTTGTGGGTTTGGTGAATATGGAAAGACAATCAATGATGGCAGTGTAGCAGGAGTGTCTAGACTATGGAGGAATGGAAGTGGCTGTGGTGCATGTTATCAGGTTAGGTGCAAAATACCAGAATACTGTGATGAAAATGGAGCATATGTGGTGGTAACAGACTATGGTGAAGGAGACAGAACAGATTTCATAATGAGCCCACGTGGTTACTCAAGGTTGGGACATAATGCAGTTGCATCTGAAGTGCTGTTCAAATATGGTATAGTGGATATTGAATACAAAAGGGTCCCATGCAAATATAATGGCTATAACATAATGTATAAGGTCCATGAACACAGCAACAACCCCTCCTACTTGGCAATCCTCATTCTCTATGTAGATGGAACATATGATGTAACTTCTGCTGAGATATGGCAGGAAGAGTGCAAAGAATGGAGACCACTACGCAGGGCCTATGGTGCAGTATTTGACACTGCTAACCCACCAAGTGGTGAAATCAAGTTAAGGTTCCAAGTGAGTGGCAATGAAGGTGTTTACTGGGTGCAGTCCAAGAATGCTATCCCTAGTGATTGGAAAGCTGGCTCTGCTTATGACACTGAGATTCAGCTCACTTAA 759 0.4242 MKLSFKHQIGLVCVTLLLHALCINSEDYFTESRATYYGSPDCYGNPRGACGFGEYGKTINDGSVAGVSRLWRNGSGCGACYQVRCKIPEYCDENGAYVVVTDYGEGDRTDFIMSPRGYSRLGHNAVASEVLFKYGIVDIEYKRVPCKYNGYNIMYKVHEHSNNPSYLAILILYVDGTYDVTSAEIWQEECKEWRPLRRAYGAVFDTANPPSGEIKLRFQVSGNEGVYWVQSKNAIPSDWKAGSAYDTEIQLT* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0966 252 PANTHER EXPANSIN-B3 4 251 - -
Lan17g0966 252 SUPERFAMILY PHL pollen allergen 153 246 IPR036749 -
Lan17g0966 252 Pfam Expansin C-terminal domain 153 236 IPR007117 -
Lan17g0966 252 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 251 - -
Lan17g0966 252 SUPERFAMILY Barwin-like endoglucanases 18 150 IPR036908 -
Lan17g0966 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Lan17g0966 252 Gene3D - 147 248 IPR036749 -
Lan17g0966 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Lan17g0966 252 Gene3D - 20 146 IPR036908 -
Lan17g0966 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Lan17g0966 252 PRINTS Major pollen allergen Lol pI signature 65 76 IPR005795 GO:0005576|GO:0019953
Lan17g0966 252 PRINTS Major pollen allergen Lol pI signature 85 95 IPR005795 GO:0005576|GO:0019953
Lan17g0966 252 PRINTS Major pollen allergen Lol pI signature 156 171 IPR005795 GO:0005576|GO:0019953
Lan17g0966 252 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Lan17g0966 252 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Lan17g0966 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Lan17g0966 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lan17g0966 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lan17g0966 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Lan17g0966 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0966 Lan-Chr17 13576111 13579003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0966 1 252 Expansin Gene Family AT4G17030 57.708 1.06e-109 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0966 - - gmx:100779487 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0926 18 14506619 14508794 Lan17g0966 17 13576111 13579003 PCT
Lan17g0966 17 13576111 13579003 Lan18g0926 18 14506619 14508794 PCT