Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0964 ATGGGCAAGGAAGGACCTTGTTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTACTTTGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGATAGTGATGATCAAAGGGTTTCCAGGGTAAAGAGCTTATCATTGAATAAGAACAAAGAAGTGAAAGTGCTCAAAAGAAAGGCGGGACAAAATGATTATGCTGTTTCTGGAAAGTTCGACCCTGATTACAATCAAGGATCTCGAAAGATTGTAGATGAAGATACAAGCAATAGATCAAGTTCAGGGTCAGCCGTCTCTAACTCGGAGAGCTGCGTCCAATTTGGTGGCACATATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGAAGCTACGGTACCTTCGAAAAAGAGGACATGTGGAGGTCGTCCAAAGCCGTCTTCTGTTGAGAAGCTTACAAAAGATTTATATGCTATCCTTCATGAACAACAGTCATATTTTTCTGCATCTTCTGAAGAGGATCTTATTTTCGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCACTATTGCTCATGAAGAAGAGTCTGAGGCTAGCTCTCTTTCGGTTGATAATAAACAATGCCAAATGAGTGAGGCATATTCATGTTCAGGTAGCATTCCTGTGTTCCGCGATTGCGGTGGCATAAACTTCTCATCTCAGGAAGTTGGCAAAGTTATGCAACAGGAGGAACTTAAAAGGGACAAGTCTCCACTTGAAAGATTACAATTTCTCGGAAATCACGATTCACCACTGGGCTTAATAAATTTAGATGACATAGCAAATTACGAGCAGTATATGAATAACTTGACAAATGATGAGCAGCAGCAATTGCTGAAGTATCTTCCTGAGGTCGATTCTGCGGAACTTCCTAATAGCCTTAAAATTATGTTTGATAGCTCTCAATTCAAGGAGAACTTAACTTATTTCCAACAACTTCTTGGGGAAGGTGTCTTCGATATCTTTATGTTCAGGGCAAAACCTGAAGATTGCAAGACCTTGAAAAGGTTTGCGTTATCTAATCTGTTGAAGTCGAAATGGGTAGAACAGTATAATTTTCTCAAGAGATGTAAAGACAGAGCTGGAAAATCTGTTGCTATGGGCTCTCCTGGTATGGCATCTAGTAATGTTGTAAATGTCAAGAGATTGCGTGACGGTCAAAATAAAAAATTGCCAGAACTGAAGAAAACAATGAAGAGCCCGAAAAGTATGATCATAAAGGCTGGATGTGAGGGCAAAGAAGTTGCAGAAGATGGTTCTTGTTTCGGTGCAAAAAGCTTATTTGCATTGCCTCATGATCATAGCTCGCACATGATGGATTCTTTAAACTTTGATTATGAGAATTCTGATCAGGATTTGCTGCTAGATGTGCCATCTAACAGTTCTTTTCCACAGGCAGAGCTTCTGCACCCTGCTCCAAGCTTTGGTGCTCAAGCTGGCTGCAGCAGTAGCTCAATATACTCACATGTTGCACATCCTTAG 1602 0.4182 MGKEGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDSDDQRVSRVKSLSLNKNKEVKVLKRKAGQNDYAVSGKFDPDYNQGSRKIVDEDTSNRSSSGSAVSNSESCVQFGGTYASDLTGPAQSVVWEATVPSKKRTCGGRPKPSSVEKLTKDLYAILHEQQSYFSASSEEDLIFESETPMVSVEIGHGSILIRHPSTIAHEEESEASSLSVDNKQCQMSEAYSCSGSIPVFRDCGGINFSSQEVGKVMQQEELKRDKSPLERLQFLGNHDSPLGLINLDDIANYEQYMNNLTNDEQQQLLKYLPEVDSAELPNSLKIMFDSSQFKENLTYFQQLLGEGVFDIFMFRAKPEDCKTLKRFALSNLLKSKWVEQYNFLKRCKDRAGKSVAMGSPGMASSNVVNVKRLRDGQNKKLPELKKTMKSPKSMIIKAGCEGKEVAEDGSCFGAKSLFALPHDHSSHMMDSLNFDYENSDQDLLLDVPSNSSFPQAELLHPAPSFGAQAGCSSSSIYSHVAHP* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0964 533 Pfam Asx homology domain 283 360 IPR028020 -
Lan17g0964 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 46 - -
Lan17g0964 533 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lan17g0964 533 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lan17g0964 533 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Lan17g0964 533 MobiDBLite consensus disorder prediction 89 123 - -
Lan17g0964 533 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lan17g0964 533 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 533 - -
Lan17g0964 533 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lan17g0964 533 PANTHER OSJNBB0038F03.10 PROTEIN 1 533 IPR044589 -
Lan17g0964 533 Gene3D - 4 81 IPR013088 GO:0006355|GO:0008270
Lan17g0964 533 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 288 400 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0964 Lan-Chr17 13548925 13554293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0964 1 510 C2C2-Gata Transcription Factor Family AT4G17570 52.672 5.14e-152 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan17g0964 ASXH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0964 - - gmx:100799745 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0954 6 8936493 8942588 Lan17g0964 17 13548925 13554293 LSH
Lan18g0381 18 7222358 7227635 Lan17g0964 17 13548925 13554293 LSH
Lan17g0405 17 2997860 3002157 Lan17g0964 17 13548925 13554293 PCT
Lan18g0381 18 7222358 7227635 Lan17g0964 17 13548925 13554293 PCT
Lan17g0964 17 13548925 13554293 Lan17g0405 17 2997860 3002157 PCT
Lan17g0964 17 13548925 13554293 Lan18g0381 18 7222358 7227635 PCT