Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0954 ATGACTCGACGTTGTTCCCATTGCAGCCACAATGGGCACAACTCTAGAACATGTCCTAACCGAGGTGTGAAGCTATTTGGAGTTCGATTAACTGATGGGTCGATTCGTAAGAGTGCTAGTATGGGAAATCTTAATCACTATGCTTCTTCTGGTGGAACCCTCATTGGTGCTGAAACCCTTGATCATGGTGCTGTTGCTGCCGATGGTTATGCTTCTGAGGATTTTGTTACTGGGTCATCTTCTAATTCTCGTGAAAGAAAAAAAGGAATTCCGTGGACTGAGGAAGAACATAGAATGTTCTTACTTGGATTGCAGAAGCTGGGAAAAGGCGATTGGCGTGGAATTGCAAGGAACTATGTTATATCTAGGACACCAACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTATCTAGGCGGAAAAGGCGTTCCAGCTTGTTTGATATTGTTGCAGATGAAGCAGCTGAAGCTCCAATGGTAGAGCAAGACTTCTTGTCTGCTAATCAGTTCGAAGCTGAAACAGAAGGCAACAATCCCTTACCTGCTCCTCCTACCCTCGATGAAGAATGTGAATCCATGGATTCCACTAATTCGAATGATGGCGAGCCTGCAGGCCCTGCACCATTAAAGCCTGACAATAACTCACAATCATCTTATCCACTAATATATCCTTCATATTACCCCCCGTTCTTCCCATTGCCTCTGCCCTATTGGTCAGGATACAGTCCCGCCGAGCCCGTGAAGAAGGAGGACATGCACGAAGTGCTGAAGCCAACTCCGGTACATTCTAAAAGCCCAATCAATGTTGATGAACTTGTTGGCATGTCCAAACTGAGTTTAGGAGAGACTATTGGTGACTCTGGCCCCTCTGCTTTGAAACAAAAACTTCAAGAAGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACTCCTGCGACAACTGGTTCGAATGTGAATGGCAGTGTCATCCATGCAGTTTAA 996 0.4538 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLNHYASSGGTLIGAETLDHGAVAADGYASEDFVTGSSSNSRERKKGIPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAAEAPMVEQDFLSANQFEAETEGNNPLPAPPTLDEECESMDSTNSNDGEPAGPAPLKPDNNSQSSYPLIYPSYYPPFFPLPLPYWSGYSPAEPVKKEDMHEVLKPTPVHSKSPINVDELVGMSKLSLGETIGDSGPSALKQKLQEEGPSRQSAFHATPATTGSNVNGSVIHAV* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0954 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 140 IPR017930 -
Lan17g0954 331 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 139 IPR006447 GO:0003677
Lan17g0954 331 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
Lan17g0954 331 ProSiteProfiles Myb-like domain profile. 84 136 IPR001005 -
Lan17g0954 331 MobiDBLite consensus disorder prediction 302 331 - -
Lan17g0954 331 CDD SANT 91 136 IPR001005 -
Lan17g0954 331 PANTHER BNAC07G34310D PROTEIN 1 323 - -
Lan17g0954 331 SUPERFAMILY Homeodomain-like 86 141 IPR009057 -
Lan17g0954 331 MobiDBLite consensus disorder prediction 289 331 - -
Lan17g0954 331 ProSiteProfiles SANT domain profile. 92 140 IPR017884 -
Lan17g0954 331 SMART sant 88 138 IPR001005 -
Lan17g0954 331 MobiDBLite consensus disorder prediction 177 220 - -
Lan17g0954 331 Gene3D - 90 142 - -
Lan17g0954 331 PANTHER TRANSCRIPTION FACTOR KUA1 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0954 Lan-Chr17 13238209 13241557 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan17g0954 Myb_DNA-binding 2.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0954 - - gmx:778163 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0968 6 9090753 9095932 Lan17g0954 17 13238209 13241557 LSH
Lan18g0396 18 7484932 7487285 Lan17g0954 17 13238209 13241557 LSH