Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0950 ATGGGTGCCTACAAGTATATCTCGGAGCTCTGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTATCGTCAGCAACCTTCCATTGTCCGCCTCACAAGACCTACTCGTCCTGACAAGGCTCGCCGCTTGGGATATAAAGCTAAGCAGGGTTATGTGGTTTACCGTGTTCGTGTTCGTCGAGGTGGTCGCAAGAGACCAGTTCCCAAGGGTATCGTATACGGGAAACCAACAAATCAAGGTGTTACTCAGCTGAAATTTCAGCGTTCCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGCAGGAAGCTGGGTGGCCTCAGGGTTCTCAATTCTTACTGGGTGAACGAGGACTCAACTTACAAATATTTCGAGATCATCCTTGTGGATGTTGCCCACAGTGCTATCAGAAATGATCCAAGGATCAATTGGCTTGTCAACCCAGTACACAAACATCGGGAGCTACGTGGCCTCACTTCTGCTGGGAAAAGTAATAGGGGTTTACGCGGCAAAGGTCATCGCCACCACAAAGCACGTCCATCCCGCAGGGCTACCTGGAAGAGAAACAACACCCTTTCCCTTCGTCGTTACCGCTGA 615 0.5122 MGAYKYISELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLVNPVHKHRELRGLTSAGKSNRGLRGKGHRHHKARPSRRATWKRNNTLSLRRYR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0950 204 MobiDBLite consensus disorder prediction 163 204 - -
Lan17g0950 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Lan17g0950 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lan17g0950 204 MobiDBLite consensus disorder prediction 173 190 - -
Lan17g0950 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Lan17g0950 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Lan17g0950 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lan17g0950 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lan17g0950 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0950 Lan-Chr17 13189228 13191288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0950 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.176 4.17e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0950 K02877 - gmx:100305473 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0414 17 3079353 3081241 Lan17g0950 17 13189228 13191288 PCT
Lan18g0914 18 14408070 14412001 Lan17g0950 17 13189228 13191288 PCT
Lan17g0950 17 13189228 13191288 Lan17g0414 17 3079353 3081241 PCT
Lan17g0950 17 13189228 13191288 Lan18g0914 18 14408070 14412001 PCT