Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0913 ATGGATAAGTTCTTAATCAATTGGTGCGTTGGATACTTTCTTCTTTATTCTCTCTTGCTTGTGCATGGCATAGAATTATCATGCAATCAAACTCCATACCCTCATGTGTGCAAACATTACATTGACACTAGTCACGCCATTGATAAAATATCAACTACCCTAGATGCTTCATCTTCTTATAGTTCCTTCCATGATATGGCACTTAAGGTCACCATGGACCAAGCCATAAAATATCACAAACTTTTCTCGACCATGGAAATGAATAATTTCAAAGACACTCGTGCCAAGTTAGCATGGGAAGATTGTTTACATCTCTATGAGGACACAATTCATCAACTCAACCATTCAATGAGATCAAATAATATAAACGACAAGTTAACTTGGCAAAGTGCATCTATTGCCAATCATCAAACTTGCCAAAATGGTTTCATTGATTTCAACCTTCCTTCTCACCTAAACTACTTCCCATCTATGTTAACAAACTTCTCCAAATTGCTTAGCAATTCCTTGTTCATTAGTAACACCATCGCTCTCGCATCATCATCATCGGCGAAACAAGTTGGTGGGAGAAAGTTGCTTTCATCACATGATGGTTTCCCTAATTGGGTTTCATCTTCAGATAGAAGGCTACTTCAAGCTACAAGGGCAGCACCAATTAAAGTTGATGTTGTTGTGGCACAAGATGGGAGTGGTAATTATAAGACCATATCTGAAGGTGTAGCTGAAGCTTCAAAGTTGAGTGGGAAAGGAAGAATTGTTGTGCATGTGAAAGCTGGAATTTATAAAGAGAATGTTGATATCAAGAAGACAGTGAAGAAGTTAATGATAATTGGAGATGGGATTGATGCTACTATTATTACTAGTAACCGTAATACACAAGATGGATTTACCACTTTTCGTTCAGCTACTTTTGCGGTTTCAGGTGAAGGCTTCATCGCAAAGGACATAACCTTCGAGAACACAGCCGGACCACAGAAGCACCAAGCCGTGGCGCTCCGTTCCGGCGCCGATCACTCAGTATTCTACCGCTGCAGCTTCAAAGGCTACCAAGACACCTTATACGTGCACACTCAGCGCCAATTCTACCGCGACAGTGACATATACGGAACCGTAGACTTCATCTTCGGCGACGCCATAACAGTTCTTCAAAACTGCAACATTTATGTGAGAAAACCAATGAGTAACCAACAAAACACAGTCACAGCACAAGGGAGAACTGATCCTAATGAAAACACTGGCATCATCATTCATAATTCTCGTATAACTGCTTCTGGTGACTTGAAACCTATTCAAAGTAATTTTAAAACGTTTCTTGGAAGACCGTGGCAAAAGTATTCGAGGACTGTGATTTTGAAGAGTAATCTTGATGGGTTGGTTAACCCTTTGGGTTGGATTCCTTGGAGCGGAAGCTTTGCTTTGAGTACTTTGTATTATGGTGAATACATGAATATTGGAGCTGGTGCTAACACTAAAGGTAGGGTTAACTGGGTAGGTTTTCATGTGATAAATGATCCTAGTGAGGCTGTGAAATTCTCTGTTGGTGATTTCTTGAATGGGGACTCGTGGATTCCTGGTAGTGGTGTTCCATTTGATGTGGGGTTGTGA 1605 0.4056 MDKFLINWCVGYFLLYSLLLVHGIELSCNQTPYPHVCKHYIDTSHAIDKISTTLDASSSYSSFHDMALKVTMDQAIKYHKLFSTMEMNNFKDTRAKLAWEDCLHLYEDTIHQLNHSMRSNNINDKLTWQSASIANHQTCQNGFIDFNLPSHLNYFPSMLTNFSKLLSNSLFISNTIALASSSSAKQVGGRKLLSSHDGFPNWVSSSDRRLLQATRAAPIKVDVVVAQDGSGNYKTISEGVAEASKLSGKGRIVVHVKAGIYKENVDIKKTVKKLMIIGDGIDATIITSNRNTQDGFTTFRSATFAVSGEGFIAKDITFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVHTQRQFYRDSDIYGTVDFIFGDAITVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIIIHNSRITASGDLKPIQSNFKTFLGRPWQKYSRTVILKSNLDGLVNPLGWIPWSGSFALSTLYYGEYMNIGAGANTKGRVNWVGFHVINDPSEAVKFSVGDFLNGDSWIPGSGVPFDVGL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0913 534 Pfam Pectinesterase 222 520 IPR000070 GO:0030599|GO:0042545
Lan17g0913 534 PANTHER PECTINESTERASE 19 533 - -
Lan17g0913 534 ProSitePatterns Pectinesterase signature 1. 248 267 IPR018040 -
Lan17g0913 534 SMART PMEI_2 19 172 IPR006501 GO:0004857
Lan17g0913 534 Gene3D - 216 534 IPR012334 -
Lan17g0913 534 SUPERFAMILY Pectin lyase-like 217 532 IPR011050 -
Lan17g0913 534 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 19 533 - -
Lan17g0913 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 177 IPR035513 -
Lan17g0913 534 Pfam Plant invertase/pectin methylesterase inhibitor 24 170 IPR006501 GO:0004857
Lan17g0913 534 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Lan17g0913 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 176 IPR006501 GO:0004857
Lan17g0913 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 176 IPR035513 -
Lan17g0913 534 CDD PMEI-like_3 26 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0913 Lan-Chr17 12004628 12008557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0913 12 534 Carbohydrate Esterase AT1G23200 52.555 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0913 - - gmx:100817350 810.061