Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0907 ATGTCATCACAAAACTCCCCCACTGAACCCCCTCACTTCCACGCGCCTCTTCTCCGTTCCCGCCTCGATGCCACCTCACGCGCTCCCATCCTCGCCCTCCTTCTCGGCGGTCGTCGTCGCGGTCCCTCCATGATGGTCCGAGAGACGGCGGCGCGCGAGCTAGAGGAGCGCCGCGCTGACTGGGGATACTCGAGACCGGTGGTTGCGCTCGACATGACGTGGAACATGGCGTTCGTGGTGGTTTCGGCGGTGATGCTTGGTTGCACGTTCGGTGAAAAGCCGAACGCGCCAATCCGGTTCTGGATCTGCGGTTACGCGGTGCAGTGTTTGGTTCATGTGGTGTTGGTGTGGCTGGAGTATAGGAGGAGGAACGGGAGTGGATCGCGGAGGTTGAGGGATGAAGAAATTGGGAGCGAAGATGATGTGAATGATAGTGAGGATGATGATGATATTGGAGGTGGTAGCTTCAGGAATTTCTCTCGCTCAGGGTTTACAAAACGATGTGAATCATTGAATACAATGGTCTCATTCCTTTGGTGGATTGTGGGATTTTACTGGGTTGTCTCTAGTGGTGATATTCTTATGCAAGATGCTCCACGTTTGTACTGGTTGGCAGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCTTGCATTATTGCTATCCTCTATGCTTTTGCGGGACAGGATGGTGCATCAGAATCAGATCTAAGCGTACTCCCAAAGTACAAATTTCAAATATCCAGCAATGAGGAAAAGTTTAGTGAAGGAGGTGGGTCAATGGTTCCCGTGGAAACTGGCAGCGGTTACTTGGCAAATGAACGAACACTTTTACCCGAGGATGCAGAATGCTGTATTTGCCTCTGTAACTATGAGGATGGAGCAGAACTCCATGCTCTTCCTTGTAACCATCATTTTCATTCTACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCACTTTGCAAGTACAATATTCTCAAGGGAAATGAACAGGTGTGA 1062 0.4944 MSSQNSPTEPPHFHAPLLRSRLDATSRAPILALLLGGRRRGPSMMVRETAARELEERRADWGYSRPVVALDMTWNMAFVVVSAVMLGCTFGEKPNAPIRFWICGYAVQCLVHVVLVWLEYRRRNGSGSRRLRDEEIGSEDDVNDSEDDDDIGGGSFRNFSRSGFTKRCESLNTMVSFLWWIVGFYWVVSSGDILMQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAFAGQDGASESDLSVLPKYKFQISSNEEKFSEGGGSMVPVETGSGYLANERTLLPEDAECCICLCNYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0907 353 PANTHER TARGET OF ERK KINASE MPK-1 12 353 - -
Lan17g0907 353 SUPERFAMILY RING/U-box 291 347 - -
Lan17g0907 353 Pfam Ring finger domain 301 343 IPR001841 -
Lan17g0907 353 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
Lan17g0907 353 SMART ring_2 302 342 IPR001841 -
Lan17g0907 353 CDD RING-H2_PA-TM-RING 301 343 - -
Lan17g0907 353 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 353 - -
Lan17g0907 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 351 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0907 Lan-Chr17 11895167 11899263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0907 1 352 C3H Transcription Factor Family AT1G68070 67.606 6.11e-173 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0907 - K13148 aip:107643865 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0907 17 11895167 11899263 Lan18g0231 18 2467676 2474134 LSH