Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0901 ATGGCCATGCCTAAAGAGAAAGATGATAAAGAGTTTCATGGGAAGAAGAGGCTCAAATCCACGAGGAATGAACAAAAACAAGTTGTTGAAGTAGCAGAAGAAGAAGAAGATCATGCATCAACAGTAGTAGAAGAAGAAGAAACTGAGTTTCCACTGCAACCAGGGTTATCCTTCTACCCAACAATACCATCATCTTTTGTTGTTTGTGATGCACTTGAACTTGATTTTCCAATCATCTATGTCAACAAGGTCTTTGAAATCTCCACGGGGTATCGTGCTGATGAGGCCTTGGGTCGAAACTGTCGATTCTTACAGTATCGGGATCTCCGTGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGCCTCCAGGAAGGTATAGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTGGTGAACAGACTGAGACTAGCACCAATTCATGATGATGATGGAACTGTAACACACGTAATTGGTATCCAACTATTTTCTGAAGCAAATATAGATCTGAACCATGTTTCATATCCGGTTTTCAAAGAGACTTGCAATCAAGATGTCGATAAGAATAGTAAGTATCTTCCAAAGAATGGACAATCATTGTATACTCAGCAGCACCAAGAGATGTGTGGTATTCTTCAGCTTTCTGATGAAGTATTGGCTCACAACATTTTGTCGCGCTTGACACCAAGGGACATTGCATCCATTGGATCTGTGTGCAGGAGGATTCGTCAATTAACAAAGAATGAGCATGTTAGGAAGATGGTGTGTCAAAATGCGTGGGGCAAAGAAATGACAGGTACATTGGAACGGATGACCAAGAAGTTGGGATGGGGTCGTCTGACTCGAGAACTTACAACTCTCGAGGCCGTTTGTTGGAGGAAAATGACAGTTCGCGGTGCAGTGGAGCCTTCACGCTGCAACTTCAGTGCTTGTGCTGCAGGAAATCGACTTGTGCTGTTTGGAGGGGAAGGAGTAGATATGCAACCTATGGATGATACTTTTGTTCTAAATCTCGATGCTAAAAATCCAGTGTGGCGCAGGGTTAGTGTGAAAAAATCACCACCTGGAAGATGGGGCCACACTCTCTCATGCTTGAACGATTCTTGGTTGGTTGTTTTTGGTGGATGTGGTAGCCAAGGATTGCTCAATGATGTGTTCGTTATAGATTTGGATGCCCAACAGCCAACATGGACCGAAATCTGCGGTGGAACCCCACCACTTCCAAGATCATGGCACAGCTCTTGCACAATTGAAGGGTCCAAATTGGTTGTCTCCGGTGGATGTACAGATGCTGGGGTACTTCTTAGCGACACACATTTACTTGACCTCGCAACAGAGAATCCAACATGGAAAGAGATTCCAACTTCTTGGGCCCCTCCTTCTCGGTTGGGGCACTCACTCTCGGTCTACGGAAGAACGAAAATTCTCATGTATGGTGGACTTGCCAAGAGTGGACACTTGCGCTTACGATCCAGCGAGGCATATACCATCGATTTAGAAGATGAAAACCCACAATGGAGACAACTAGAATGCAGTGCATTCACTGGATCGGCTAGTCAAAGTGCTGTGGTTCCGCCTCCTAGACTTGATCATGTTGCTGTCAGCATGCCATGTGGGAGGGTCATTATCTTTGGTGGTTCAGTTGCAGGTCTTCACTCACCATCTCAGCTCTTTCTCTTGGACCCTTCAGAGGAGAAACCATCATGGAGGATCCTCAATGTTCCGGGGCAACCACCTAAATTTGCATGGGGTCATAGCACTTGTGTGGTTGGAGGGACAAGGGTGTTGGTATTGGGTGGACACACTGGTGAGGAATGGATACTGAATGAGGTGCATGAGTTGTGCTTGGCAAGTAGACAAGACTCTGACCTGTGA 1911 0.4574 MAMPKEKDDKEFHGKKRLKSTRNEQKQVVEVAEEEEDHASTVVEEEETEFPLQPGLSFYPTIPSSFVVCDALELDFPIIYVNKVFEISTGYRADEALGRNCRFLQYRDLRAQRRHPLVDPVVVSEIRRCLQEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNHVSYPVFKETCNQDVDKNSKYLPKNGQSLYTQQHQEMCGILQLSDEVLAHNILSRLTPRDIASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEMTGTLERMTKKLGWGRLTRELTTLEAVCWRKMTVRGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPVWRRVSVKKSPPGRWGHTLSCLNDSWLVVFGGCGSQGLLNDVFVIDLDAQQPTWTEICGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTHLLDLATENPTWKEIPTSWAPPSRLGHSLSVYGRTKILMYGGLAKSGHLRLRSSEAYTIDLEDENPQWRQLECSAFTGSASQSAVVPPPRLDHVAVSMPCGRVIIFGGSVAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNEVHELCLASRQDSDL* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0901 636 MobiDBLite consensus disorder prediction 1 40 - -
Lan17g0901 636 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 23 633 - -
Lan17g0901 636 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 173 IPR035965 -
Lan17g0901 636 Coils Coil 15 49 - -
Lan17g0901 636 Pfam Galactose oxidase, central domain 317 366 - -
Lan17g0901 636 SUPERFAMILY F-box domain 218 292 IPR036047 GO:0005515
Lan17g0901 636 TIGRFAM sensory_box: PAS domain S-box protein 75 172 IPR000014 -
Lan17g0901 636 Gene3D PAS domain 57 184 - -
Lan17g0901 636 Pfam PAS domain 73 172 IPR000014 -
Lan17g0901 636 CDD PAS 62 172 IPR000014 -
Lan17g0901 636 Pfam F-box domain 223 260 IPR001810 GO:0005515
Lan17g0901 636 MobiDBLite consensus disorder prediction 1 36 - -
Lan17g0901 636 SUPERFAMILY Galactose oxidase, central domain 304 621 IPR011043 -
Lan17g0901 636 Pfam Galactose oxidase, central domain 382 429 - -
Lan17g0901 636 Pfam Galactose oxidase, central domain 431 482 - -
Lan17g0901 636 Gene3D - 528 634 IPR015915 GO:0005515
Lan17g0901 636 PANTHER ADAGIO PROTEIN 3 23 633 - -
Lan17g0901 636 SMART pac_2 137 178 IPR001610 -
Lan17g0901 636 Gene3D - 292 527 IPR015915 GO:0005515
Lan17g0901 636 Pfam Kelch motif 541 588 IPR011498 GO:0005515
Lan17g0901 636 Gene3D - 216 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0901 Lan-Chr17 11817570 11820588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0901 61 174 AGC Kinase Gene Family AT5G58140 42.105 2.37e-20 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0901 K12116 - gmx:100301889 1146.72