Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0887 ATGGGTAAGAAGAAAAAGAGGGTTTCTTCGAAGGTATGGTGTTATTACTGCGATCGCGAATTCGATGATGAGAAGATATTGGTTCAGCATCAGAAAGCGAAGCACTTCAAGTGCCATGCCTGCCACAAGAAGCTTTCCACAGCTGGCGGCATGGCCATCCATGTTCTCCAGGTTCACAAGGAATCTGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAATCCACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTCTTGGCTTCTCATTATGGAGAGGATGATGACGAGGTTCCATCAAAGGCAGCCAAGGTGGATATCCCATCAACTCCACTTGTACGTGGAATGATGCCACCTCCTTTGGGTACAGGTTATCCTCCTCAACCACCTTTTGGCACAGTGCCACCAATTTATAATCCAGCTGTACCTGTTCCTCCGAATGGTTGGGCAGTTCCACCTCGACCTCACTCATGGTATCCACAACCTCCATCTGTTTCTATTCTTCCTCGTGCCCCATATCCACAGCAGCCATTATTTCCTGTGCAGAATGTGAGGCCACCATTACCAACAACTGTTCCTCCCGCACTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTACAACTTCTGTCCCAGTTGTACAACCTTTGTTTCCAGTTGTTGGTAATAACAATACAACTCAAGGTTCATCATTTTCTGTTGCCCCTGTAGCTTCAAGTGTTCCCTCGATAACACCTGCACTGTCTATGAATGTCCTTGTTGATGCACATTTGAGTGCCATCTCTTCTCTGACAAATAACTACCAGGCTATAGGGGTTCCAGGTGAGGCAGCAAGTAACTCCCACTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCTCCAGTAATTGCAAACAAAGCTCCTGTTTCCCAGCCTGCGACTAATGAAGTCTACTTAGTTTGGGATGATGAGGCGATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTCGCAGGTCGTATGGCATTTTAG 1119 0.4647 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHACHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLASHYGEDDDEVPSKAAKVDIPSTPLVRGMMPPPLGTGYPPQPPFGTVPPIYNPAVPVPPNGWAVPPRPHSWYPQPPSVSILPRAPYPQQPLFPVQNVRPPLPTTVPPALQTQITPPGLPTSTTSVPVVQPLFPVVGNNNTTQGSSFSVAPVASSVPSITPALSMNVLVDAHLSAISSLTNNYQAIGVPGEAASNSHSYASGPNTGGPSIGPPPVIANKAPVSQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0887 372 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Lan17g0887 372 Gene3D Classic Zinc Finger 1 66 - -
Lan17g0887 372 MobiDBLite consensus disorder prediction 286 311 - -
Lan17g0887 372 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Lan17g0887 372 SMART c2h2final6 12 35 IPR013087 -
Lan17g0887 372 SMART c2h2final6 36 59 IPR013087 -
Lan17g0887 372 PANTHER ZINC FINGER PROTEIN 207 1 372 - -
Lan17g0887 372 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 372 - -
Lan17g0887 372 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0887 Lan-Chr17 11504396 11508438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0887 1 352 C2H2 Transcription Factor Family AT1G30970 63.187 2.10e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan17g0887 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0887 - - gmx:100819009 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0887 17 11504396 11508438 Lan6g1028 6 9799602 9803852 LSH