Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0886 ATGCCTGTTATCACAGAAACAACAACAAAAGTAGTGGCAGAAAACATGAAATGGAGAAAACCCAGAAACCAAATCAACATTACAGAAACAGATCCAAACCTACAAACCCCTTCACTAACCCAATCCACAACTTGCAAATCCACCATTTCCTCTCTCTTACTCTCAACTTTCTTCAATAACAACAACAACAATGAAAACACCACCACCAACACCACCAAAAACAACAGAAACCACCACCATAGCAAGAAAAAAACAAACTTTTCTGCTGCATCAACCTTCAGGGGCTTGGGCTGCACCGCCGGAGCACCGCAAGAGGTGTCGGTTCCAGCTATGATTCGAAGCTCAGCTGATTGGGAGGTGAATAAGAAAAAGAAAGGAAGAAAAAAGAAACACAAGAGTACTAAGAACAGTAACATTGTTATTATTCCAGAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACTGATGCAGCATCTGTTGATCATGTTGTGACAAGGAAGAATGTGTCTTCAAGAGGGAAAATTGATGTTGAGAAGATAACTCATAGAGAGGGTTCATCTTATTTGGGAAGGCGTCCTGTCACTCCAGAAACCATCTCGTTTCTGGACACTGATCCTGACATTTTCGCAGCCTCGGATTCCTTTGGACCTGCGGCTCCATACTATCGCCATATTCAAGATCCTTCATCTGATGATTCATCTGATGGTTTTGCTGAGATTTTGCTTCAAGGTGGTCTACTAATGGGGGGACGATTAAGTAGGCATGACCGCTTCAGAGGCTTGAGACTTAATATTGATAACATGACATATGAGCAATTGCTTGATCTCAGTGAAAGAATTGGTTATGTGAATGCTGGACTTAAAGAAGATGAGATGGGATGCAACATAAGGAAGACTAAGTTTAAATTTTCACATGATGCATCAAAGAATCTAATAGATAAAAAGTGCACCATTTGTCAGGAAGAGTATGAAGCAGATGATGAGCTGGGGAAGCTGAATTGTAAACACAGCTATCACGTTCGGTGTATAAAACAATGGGTTGCGCAGAAAAATTTCTGTCCAGTTTGCAAGCAACAAGTCGTGGCTCGACACTGA 1098 0.4162 MPVITETTTKVVAENMKWRKPRNQINITETDPNLQTPSLTQSTTCKSTISSLLLSTFFNNNNNNENTTTNTTKNNRNHHHSKKKTNFSAASTFRGLGCTAGAPQEVSVPAMIRSSADWEVNKKKKGRKKKHKSTKNSNIVIIPEDVWCGPGIGFSTDAASVDHVVTRKNVSSRGKIDVEKITHREGSSYLGRRPVTPETISFLDTDPDIFAASDSFGPAAPYYRHIQDPSSDDSSDGFAEILLQGGLLMGGRLSRHDRFRGLRLNIDNMTYEQLLDLSERIGYVNAGLKEDEMGCNIRKTKFKFSHDASKNLIDKKCTICQEEYEADDELGKLNCKHSYHVRCIKQWVAQKNFCPVCKQQVVARH* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0886 365 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 8 365 - -
Lan17g0886 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 8 365 IPR045191 GO:0061630
Lan17g0886 365 MobiDBLite consensus disorder prediction 59 74 - -
Lan17g0886 365 ProSiteProfiles Zinc finger RING-type profile. 317 358 IPR001841 -
Lan17g0886 365 MobiDBLite consensus disorder prediction 59 85 - -
Lan17g0886 365 Pfam Ring finger domain 316 358 IPR001841 -
Lan17g0886 365 SMART ring_2 317 357 IPR001841 -
Lan17g0886 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 363 IPR013083 -
Lan17g0886 365 SUPERFAMILY RING/U-box 316 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0886 Lan-Chr17 11461215 11466090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0886 1 272 C3H Transcription Factor Family AT1G73760 37.460 1.49e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0886 - - gmx:100788837 401.749