Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0882 ATGGATCTTGAGGAGGAGATCCGTTCATTACAGCTTGACTCAGCAGAAGAAAGTAATGGGGTGGTAAATCCGGAGGATGTAAAGCCAGAAGAAGTTGATAAATCTGCTAAGATAGATGAAGATCCAAAGCAGGAGGTTCAACCACAACTTGTCCAGGCTGATGAGCCAAAAGTGAAAGTTAAGGAAACTCCTCCCGTGCAAGATGAAAAAGATGATATAGAGATGAAGAAAAGACACGTGAATGTTGTATTCATTGGTCACGTCGATGCTGGTAAGTCTACAACTGGAGGCCAAATACTTTTCCTCAGTGGTCAGGTTGATGAACGAACTATCCAAAAATATGAGAAAGAAGCCAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAAGAAGAGAGGGCAAAGGGGAAAACTGTTGAAGTCGGAAGAGCACATTTTGAGACAGAGAAAACAAGGTTCACAATTTTGGATGCTCCTGGTCACAAAAGCTACGTTCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAATTTGAAACTGGATATGAGAAAGGTGGACAGACTCGTGAACATGTCCAGCTTGCAAAAACGTTGGGTGTGGCTAAGCTGATTGTTGTTGTTAATAAAATGGATGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGATTCCATTTCTGAAGCAATCAGGATACAATGTGAAGAAAGATGTCCTGTTTTTACCAATATCTGGATTGAATGGTGCAAACTTACAAACGAGAATGGATAGAAGCATTTGTCCTTGGTGGGATGGTCCTTGCTTATTTGAAGCCCTTGATTCTGTTGAACTTCCAACACGAGATCCCCAAGCTGCATTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGGACTGTTGTTATGGGCAAAGTGGAATCTGGCACTGTTCGTGAGGGGGATTCTTTGTTGGTCATGCCAAATAAGGATCACGTAAAAGTTGTTGCTATATTTATTGATGAAGATCGGGTTAAACGTGCTGGACCTGGAGAAAATTTACGGATTAGATTATCTGGTGTTGAAGATGAAGACATATTATCTGGGTTTGTCCTGTCTTGCGTTGAAAGTCCAATACCAGCTGTTACCGAGTTTGTTGCTCAGTTGCAGATCCTTGAATTGTTAGACAATGCTATTTTTACTGCTGGTTACAAGGCTATTCTGCACATCCACTCTGTAGTTGAAGAGTGTGAGATTGTTGACCTCTTACATCAAATTGATCCAAAGACAAGGAAACCTATTAAAAAGAAAGTTCTCTTTGTGAAGAGTGGAGCTGGTGTTGTGTGCCGGGTTCAGGTTAGCAACACAATATGCATAGAGACATTCTCTCGTTTCCCACAACTTGGGAGGTTTACTCTTCGCACTGAAGGGAAAACTATTGCAGTGGGAAAAGTTACTGGTCTGTGA 1512 0.414 MDLEEEIRSLQLDSAEESNGVVNPEDVKPEEVDKSAKIDEDPKQEVQPQLVQADEPKVKVKETPPVQDEKDDIEMKKRHVNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVAKLIVVVNKMDEPTVQWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLNGANLQTRMDRSICPWWDGPCLFEALDSVELPTRDPQAAFRMPIIDKFKDMGTVVMGKVESGTVREGDSLLVMPNKDHVKVVAIFIDEDRVKRAGPGENLRIRLSGVEDEDILSGFVLSCVESPIPAVTEFVAQLQILELLDNAIFTAGYKAILHIHSVVEECEIVDLLHQIDPKTRKPIKKKVLFVKSGAGVVCRVQVSNTICIETFSRFPQLGRFTLRTEGKTIAVGKVTGL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0882 503 Pfam Elongation factor Tu domain 2 321 387 IPR004161 GO:0005525
Lan17g0882 503 Gene3D Translation factors 306 390 - -
Lan17g0882 503 CDD eRF3_II 309 387 - -
Lan17g0882 503 MobiDBLite consensus disorder prediction 1 69 - -
Lan17g0882 503 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Lan17g0882 503 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Lan17g0882 503 PRINTS GTP-binding elongation factor signature 140 148 IPR000795 GO:0003924|GO:0005525
Lan17g0882 503 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Lan17g0882 503 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Lan17g0882 503 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Lan17g0882 503 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 306 IPR000795 GO:0003924|GO:0005525
Lan17g0882 503 Gene3D - 59 301 IPR027417 -
Lan17g0882 503 MobiDBLite consensus disorder prediction 23 44 - -
Lan17g0882 503 CDD EF1_alpha 81 301 - -
Lan17g0882 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 312 IPR027417 -
Lan17g0882 503 Pfam Elongation factor Tu GTP binding domain 77 279 IPR000795 GO:0003924|GO:0005525
Lan17g0882 503 PANTHER TRANSLATION FACTOR 2 498 - -
Lan17g0882 503 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 397 502 IPR009001 -
Lan17g0882 503 Gene3D Translation factors 396 503 - -
Lan17g0882 503 SUPERFAMILY Translation proteins 300 393 IPR009000 -
Lan17g0882 503 MobiDBLite consensus disorder prediction 55 69 - -
Lan17g0882 503 CDD eRF3_C_III 395 503 - -
Lan17g0882 503 PANTHER BNAA06G12300D PROTEIN 2 498 - -
Lan17g0882 503 Pfam Elongation factor Tu C-terminal domain 394 502 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0882 Lan-Chr17 11366319 11374637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0882 77 498 Eukaryotic Initiation Factors Gene Family AT5G60390 37.412 2.60e-95 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0882 K03267 - gmx:100793653 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0882 17 11366319 11374637 Lan6g1021 6 9734833 9747081 LSH