Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0849 ATGGGTTTATTGTGGGGAAGAATAAGGAAGAACAACAAACACAAAGTATCCAAGGTGGTGGAGGAGTTAGTGACTCCTAACCATTTTTGGTGCCCAATTTCTCTTGACATGATGAAAGATCCTGTGACATTATCCACTGGGATCACATATGATAGAGAAAGCATAGAAAAATGGTTTGAAAATGGGAACTACACATGTCCTGTTACCAACCAAATTGTCACAAACTTTGATCTCATTCCTAACCATACCCTTAGGATAATGATCCAAGAATGGTGTGTCCAAAATCAGAAACATGGGGTTGAACGAATTCCAACACCAAGAATACCCATTAGTCCATTTGATGTAGCTGAGGTTCTTATTCATGTAAAGGCCTTAACTTTAAGTTTGGATCCATATGGGTGTTTAGAATTGGTGCAAAGAATTGAAAAATGGGGTGCTGAAAGTGAGAGGAATAGAAGGTGTATAGTGGAGAATGGTGCAGCTAATGTATTAGCCTCAGCATTTGATGCATTTGCAAATGATTCAAATGAGAGGAATGTGAGTGTGTTGGATCAGATTTTATCTTGTCTTAGTTGGATGTTTCCACTTCAACTTGAAGCTCAAAAATCTTTGGGGTCTTTGGCTTCATTACATTGCATGGTTTGGTTTTTGAAGCAACAAGATATTTCAAATAAAGAGAAGTCCATTGTTGTATTGAAAGAGCTTCTTTCATTTGGTGATGAGCAAAATATGAAAGCCTTGGTGGAAATTGAAGGAGTCAATGAAATATTGCTACAATTCCTTAACAAAAGAGTTTTTAGTACTCCAACCATTACTAAAGCTTCATTAAGTGTGGTTTGGTACTTAGTTTCTTCTTCTAAAAGTGAGAAGATAAAATTGGCATTTGTTGAATTGGGTTTGGTTTCTTCAATGCTTGACATACTCATTGACTCAGAAAGGAACCTTTGTGAGAAGGCTTTGGCTATTTTTGACTCTCTATGTAGTTGTGATGAAGGGAGAAAAGAAGCTTATGATAATGCACTAACAATTCCTCTCTTGGTTAAGAAACTATTGAGAGTTTCAGCACTAGGCACAGATTATTCTGTATCTTCTATTTGGAAGCTATGCAAATTTGAAGAGAGGGATGAAGGAAAGGTTCTGGTTGAGGCACTTCAAGTTGGTGCTTTTCAGAAGCTTTTGTTAGTGTTGCAAGTTGGTTGTGATGATAAGACCAAAGTGAAAGCCACAGAACTTCTCAAACTGATGAATCCTTATAGGGCTGGTGTGGAATGCATAGACTCAGATTTTAAGAATCTCAAGAGATCAAATTAA 1311 0.3707 MGLLWGRIRKNNKHKVSKVVEELVTPNHFWCPISLDMMKDPVTLSTGITYDRESIEKWFENGNYTCPVTNQIVTNFDLIPNHTLRIMIQEWCVQNQKHGVERIPTPRIPISPFDVAEVLIHVKALTLSLDPYGCLELVQRIEKWGAESERNRRCIVENGAANVLASAFDAFANDSNERNVSVLDQILSCLSWMFPLQLEAQKSLGSLASLHCMVWFLKQQDISNKEKSIVVLKELLSFGDEQNMKALVEIEGVNEILLQFLNKRVFSTPTITKASLSVVWYLVSSSKSEKIKLAFVELGLVSSMLDILIDSERNLCEKALAIFDSLCSCDEGRKEAYDNALTIPLLVKKLLRVSALGTDYSVSSIWKLCKFEERDEGKVLVEALQVGAFQKLLLVLQVGCDDKTKVKATELLKLMNPYRAGVECIDSDFKNLKRSN* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0849 436 CDD RING-Ubox_PUB 29 71 IPR045210 -
Lan17g0849 436 Pfam U-box domain 26 96 IPR003613 GO:0004842|GO:0016567
Lan17g0849 436 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Lan17g0849 436 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Lan17g0849 436 SUPERFAMILY ARM repeat 146 412 IPR016024 -
Lan17g0849 436 Gene3D - 130 424 IPR011989 -
Lan17g0849 436 SUPERFAMILY RING/U-box 25 101 - -
Lan17g0849 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 103 IPR013083 -
Lan17g0849 436 PANTHER WDSAM1 PROTEIN 14 435 IPR045185 GO:0061630
Lan17g0849 436 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0849 Lan-Chr17 10612972 10614517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0849 1 434 U-box Gene Family AT5G37490 43.946 3.62e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0849 - - gmx:100794340 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0849 17 10612972 10614517 Lan3g0377 3 2811818 2813170 PCT
Lan3g0377 3 2811818 2813170 Lan17g0849 17 10612972 10614517 PCT