Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0842 ATGGAGCTTGCAAGTACCCGTAGAGGACATGGAGGTCGATCCAACCGGCCAAGGAACAATCATAATAATCACGACCACAACGACTACTATGATAGTTATAAGGCTCCTCTTACCTCCAGACAGAAATATAAACTTGAATTATTGTTTAAAGTGTGTCCATATACCGATGAGAAAAAGAGGATGGAAATAAGTAGGGAATTAGGCATGCAACCTCAACAAGTAAAGTTTTGGTTTCAGAATAAAAGAGCTCAGTTGAAGACCCAACATGAACGACAAGATAATTCAGCCCTCAAAGCAGGAAATGACAGAATACGACGTGAGAACGTTGCAATTAGGGAGTCATTAAAAAAACTCACATGCCCTAATTGTGGTCCACCTATCAATGAAGATTCTTATTATGCTGACCAAAAGATGAGATTAGAGAATGTGCACCTTAAAGAAAAGCTTGATACAATGTCTAACTTTGTATCTAAGTACACTGGAAAACCATTTTCTTCACTTCCTCCAATTCTTGCTATTAATATATCCCCGATAAACGTGTCTATGGGGACTAGTACTATTGGAAAGCAACAACGATTCTTTGACGGCGGTGGAAACGGCGGTGCCGGTGGCAGCATCTCTTCTCTTGGTACCAATCTTCGCCAAGAGACTTCTACTTCTTGTAATGCTACACCATATTTGCCTCCACCTGGTTCCTTATCAGGAATTGATGAGCCTCTCATGTCAACAATTGCTACTATTGCCTTTGAAGAATTTATGAGACTCTTGCACACAAATGAACCCTTGTGGTTAATGTCACCCACTGATGGCAGAGATGTTCTTAATTTTGAGACATATGAAAGAATGTTCCCCACGGAAAATACTCGCCTCATGAATCGTAATGTTCGTGTTGAAGCGTCGAGAGACTCAGCTTTTGTTATGATGAAAAGCTCTACTTTGGCAGAAAAGTTCATGGATCCTAATCAATGGAAGGAAATTTTTGCTCCTATTGTTTCAGCTGCAAAGACTATAGAGGTTGTATCCTCTAGCATCATGGATGGTAGCAATGGTTCATTGCAGCTGATGTATGAAGAGTTACAAGTGTTGTCTCCACATGTTTCTACTCGAGAGTTCCACTTTCTTCGTTACTCACAAGAGATTGAGAAGGGAACATGGGCAATAGTTGATGTTTCATATGATAATCCACAAGACAAACAATGTATGCCACAATTTCGGTGTCACCGTTTTCCTTCTGGTTGCTTAATCCAAAACATGCCTAATGGTCAATCCAAGGTTACATGGATCGAACATGTAGAGGTAGAAGACAAAACTCCTATCCATAATTTTTTTAGAAACTTTATGCATAGTGGAATGGCTTTTGGGGCAGACAGATGGCTTGCTATACTTCAGAGGATGTGTGAAAGAATGGCTTCTCTGACCGTGACAACCAATTCGACTCGTGATCCTGGAGGAGTGATTACGTCTCCAGAAGGAAAGACAAGTATGCTGAAACTTTCTCAAAGGATGGTCACTAGTTTCTGTGCCAGTGTTGGCACATCAAATGGCCAAAACTGGACCACAACGTTTGGGTCAAATGAGATTAGATTCAGAGTCACTTACCACAAGGGCACAGACCCAAAACAAACTAATGGTGTGGTTCTAAGTGCTGCCACTACAATCTGGCTCCCAATCCCTCTACACATTGTGTTCAATTTCTTCAAGGATGAGAAAAGAAGACCTCAGTGGGATGTTCTTTCCAATGGTAATCATATGCAAGAGGTTGCAAACATAGCAAATGGTTCTCACCCTGGTAACTGCATATCGATTCTTCAAGATTTCAACACAACTAAAAATGGCATGTTGATACTCCAAGAGAGTTGCATAGATTCTTCTGGTGCACTTGTGGTTTATTGCCCAATTGATCTTCCATCAATCAACAAAGTAATGAGTGGTGAAGACCCTTCATTCATTCCTCTAATGCCATCTGGGTTTTCCATTTCACCAGATGGTCAAAAACACCATGGAGGAGGAGATGGTGCATCAACCAGCTCAAGCTTAACCAGAAGCATAGGAGGAAGTGGTGGATCATTGATCACAGTTTCATTCCAAATACTAGTGAGTAACATTCCTTCAGCAGAAATCAACATGGACTCAGTGGCACATGTTACTAATCTTATTAACACAGCTATCCATCAAATTAAGGTTTCATTGAATTGTCCTAGCTCCTCATGA 2211 0.4084 MELASTRRGHGGRSNRPRNNHNNHDHNDYYDSYKAPLTSRQKYKLELLFKVCPYTDEKKRMEISRELGMQPQQVKFWFQNKRAQLKTQHERQDNSALKAGNDRIRRENVAIRESLKKLTCPNCGPPINEDSYYADQKMRLENVHLKEKLDTMSNFVSKYTGKPFSSLPPILAINISPINVSMGTSTIGKQQRFFDGGGNGGAGGSISSLGTNLRQETSTSCNATPYLPPPGSLSGIDEPLMSTIATIAFEEFMRLLHTNEPLWLMSPTDGRDVLNFETYERMFPTENTRLMNRNVRVEASRDSAFVMMKSSTLAEKFMDPNQWKEIFAPIVSAAKTIEVVSSSIMDGSNGSLQLMYEELQVLSPHVSTREFHFLRYSQEIEKGTWAIVDVSYDNPQDKQCMPQFRCHRFPSGCLIQNMPNGQSKVTWIEHVEVEDKTPIHNFFRNFMHSGMAFGADRWLAILQRMCERMASLTVTTNSTRDPGGVITSPEGKTSMLKLSQRMVTSFCASVGTSNGQNWTTTFGSNEIRFRVTYHKGTDPKQTNGVVLSAATTIWLPIPLHIVFNFFKDEKRRPQWDVLSNGNHMQEVANIANGSHPGNCISILQDFNTTKNGMLILQESCIDSSGALVVYCPIDLPSINKVMSGEDPSFIPLMPSGFSISPDGQKHHGGGDGASTSSSLTRSIGGSGGSLITVSFQILVSNIPSAEINMDSVAHVTNLINTAIHQIKVSLNCPSSS* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0842 736 CDD homeodomain 37 89 IPR001356 GO:0003677
Lan17g0842 736 ProSiteProfiles 'Homeobox' domain profile. 34 88 IPR001356 GO:0003677
Lan17g0842 736 Gene3D - 15 103 - -
Lan17g0842 736 SUPERFAMILY Homeodomain-like 23 92 IPR009057 -
Lan17g0842 736 Pfam Homeodomain 36 86 IPR001356 GO:0003677
Lan17g0842 736 SUPERFAMILY Bet v1-like 489 723 - -
Lan17g0842 736 SMART HOX_1 30 92 IPR001356 GO:0003677
Lan17g0842 736 Gene3D - 275 457 IPR023393 -
Lan17g0842 736 MobiDBLite consensus disorder prediction 660 681 - -
Lan17g0842 736 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Lan17g0842 736 ProSiteProfiles START domain profile. 234 471 IPR002913 GO:0008289
Lan17g0842 736 SUPERFAMILY Bet v1-like 242 470 - -
Lan17g0842 736 SMART START_1 243 468 IPR002913 GO:0008289
Lan17g0842 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 38 733 - -
Lan17g0842 736 CDD START_ArGLABRA2_like 239 467 - -
Lan17g0842 736 MobiDBLite consensus disorder prediction 1 32 - -
Lan17g0842 736 Pfam START domain 249 468 IPR002913 GO:0008289
Lan17g0842 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 38 733 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0842 Lan-Chr17 10446477 10451956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0842 38 736 Homeobox Transcription Factor Family AT1G73360 53.315 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan17g0842 START 1.7e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0842 K09338 - gmx:100785023 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0842 17 10446477 10451956 Lan10g0661 10 6314296 6318208 PCT
Lan17g0842 17 10446477 10451956 Lan3g0391 3 2950617 2954719 PCT
Lan10g0661 10 6314296 6318208 Lan17g0842 17 10446477 10451956 PCT
Lan3g0391 3 2950617 2954719 Lan17g0842 17 10446477 10451956 PCT