Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0828 ATGGAAAAAAGCGGTTACCTAAACAACAACAGCAACAGCAGAGGCCGTGGTGGTAACAACAACCGTGGCGGACGAGGAGGCCGTGGTGGCAGAGGCGGAGGGTTTAATCCTCCCAACCAGTCACCGAATGTTGGTGGCGGCGGCGGTGGCAGAGGCAGGGGTTACCCTCAGCAATCTCAACAATGGTCGCAAAAGCCAAGCTCCTCTTACGGCGGCGGAATTCCTCCTACTCGAGGAACTGAACCGCCAAATCCTCCTACTCGAGGAACTGAATCACCAATTCCTCCTGCTCGAGGAACTGAATCACCAATTCCTCGTACTCGAGGAACGGGATCATCAAATCCTCTTGCTCGAGGAATTGGATCATCAAATCCTCCTACTCTGATTCATGATCTCCCTCGTCCTCACCCTCATACAATTCATGCAGATATTGAACGGCTAAACATATCAGAGTCAGATAACAAATGGGAAAAGATTTCACCTGTGCACAGGCCTGACAATGGTGGCACAATAGCAATTCGGAGAACCAGGCTTCATGTCAATCATTTTGCCGTTACCTTCAATCCACAAACTATAATTAATCACTACAATGTTGATGTGAAGCCGAAGTTGCCGCCAAGACAAGGTCGACCTCCAAAGAAGATATCGAAATCAGATTTATCTTTGATTAGGAACAAATTGTTTGCTGATCATCCTGAGACATTGGCTTTGGAAATGACTGGATATGACGGTGAAAAGAACATAGTGAGTGCAGTACCACTGCCAGAAGAAACCTTTACTGTGGACATCTCTCATGGAGAGGATGAAAAGCCTGTTTCATATGTTGTTACTTTAACTCTTGTTAACAAGCTTGAGTTTCGAAAGTTAAGGGATTACCTTAGTGGCAACATTCTGTCAATTCCTAGGAATGTTTTATATGGAATGGATTTGGTTGTGAAGGAGAATCCTGCAAAGAGCACTATTTCTTTAGGACGATGCTTCTATCCTACAAACCCTCCATTGGTAGATAATGATCTTGGACATGGCATAATCGCAATTGGAGGGTTTCAACACAGTCTGAAACCTACCTCTCAGGGTTTGGCTATGTGTTTGGACTACTCGGTTTTGTCTTTCCGTAAGAAATTGTCTGTCCTGGACTTCCTAGCTGCTCACATTGATGGTTTCAATTTGGCTGGGTTTTGGAAATACAAGAGGCAGGTTGAGGAGGCGCTTATTGGATTGAAAGTCAATGTCACTCACAGGAGAACCAAACAGAAGTACACTATTGCCAAGTTAACAGATAGGGAGATACAGCATATTACTTTTCCTCTGGTGGATCTAGAGGGTCAAAATCCCCCAACGGATGTTAGTCTTGTTGCATACTTCAAAGATAAACATGGTGTGGTCATTAAGCACAAGGATATTCCTGCCTTGCAGTTTGGAGGCAACAAGATGAATTATGTACCCATGGAGTTGTGTGTCTTAGTTGAGGGTCAAAGGTTCCCGAAAGAGTATTTGGACAGGAATGCTTCTAGGACCTTGAAAGATATGTCATTGGCTCGTCCGTGGGATAGGGAAGCTCTCATACAGAGAATGATAAAATCCAGTGATGGACCTTGCGGAGGTGGTATTCTTCAGAACTTTGGAATGAATGTCAACACTACAATGACAAATGTCACTGGACGTGTCATTGGGCCCCCAAAGTTGAAGTTAGGTGATCCAACTGGCAAGATTATTAGTATGACGGTGGATCCAGAGAAATGTCAGTGGAATCTACTTGGAAGATCAATGGTGGAAGGGAAGTCAGTTGATTGTTGGGGCATTCTTGATTTTACCAGCCAGGGGCCAAATTGGAACAAATTAAAAGGCGATCAATTCATTTGGAAGCTTATCGAAAAGTACAGAAAATTGGGCATTAACATGGCGGACCCAGTTCATATTGAACATTCTACAATGCGGAAACTTGGGGATTATGGTTCACTATGTAAGCTACTTGAAAAAATTAATGATGGTGTTTATAAAAAATGTCGGCGCCGGTTGCAATTTCTTCTTTGTGTGATGGCCAACAAAGATCCAGGTTACAAGTGGCTCAAGTGGATTTCTGAGACGAAGGTTGGCATAGTGACACAATGTTGTTTGTCTGGTAATGCTAATGAAGGGAAAGATCAGTATCTTACAAATATTGCTCTGAAGATCAATGCAAAACTTGGAGGCAGTAATGTAGAGCTTAATAGTAGACTCCCCCACTTTGAAGGTGAAGGTCATGTTATGTTTATCGGGGCTGATGTCAATCATCCTGGTTCCCGGGATGTTGATAGCCCTTCGATTGCTGCAGTGGTTGCCACTGTTAACTGGCCTGCTGCAAATCGCTATGCAGCACGTGTTTGTGCTCAAGAGCATCGGAAAGAGAAAATTGTGAACTTCGGAGAAATTTGCTATGAGCTTGTTCAATGCTATGATGGATTGAACAAAGTGAGGCCTGAAAAAATTGTCATCTTTCGTGATGGGGTAAGTGAGAGCCAATTCCACATGGTTCTTACTGAAGAGCTACTAGATTTGAAGAAAGTATTTGAGCGCTCAAATTACTTCCCAACCATCACTCTCATTGTGGCACAAAAGCGACATCAGACTCGATTGTTCCCTGCAGGTAGGAATGAGGGGACATCTGGTGGCAATGTGTTCCCTGGAACAGTTGTAGACACAAAAATCATACACCCTTTTGAATTCGATTTTTACCTGTGTAGCCATTATGGAAGCCTTGGTACAAGCAAACCCACTCACTATCATGTCTTGTGGGATGAACACAACTTTACTTCTGATGGATTGCAGGAACTCATATATAATATGTGCTTCACCTTTGCAAGGTGCACCAAACCTGTATCTTTAGTTCCTCCTGTGTACTATGCTGACCTTGCTGCGTATAGAGGACGTTTATACCATGAAGCAAATATTGGGGTGCAATCTCCATATTCTGCTGCATCCTCATCACCCATGGTGGCTTCTTCATCACTCTCTTCGACAACCTCAATTTCAAAAGATCTAGATTGCTACAAGTTGCATGCTGATGTGCAAAATGGAATGTTCTTCATCTGA 3072 0.4349 MEKSGYLNNNSNSRGRGGNNNRGGRGGRGGRGGGFNPPNQSPNVGGGGGGRGRGYPQQSQQWSQKPSSSYGGGIPPTRGTEPPNPPTRGTESPIPPARGTESPIPRTRGTGSSNPLARGIGSSNPPTLIHDLPRPHPHTIHADIERLNISESDNKWEKISPVHRPDNGGTIAIRRTRLHVNHFAVTFNPQTIINHYNVDVKPKLPPRQGRPPKKISKSDLSLIRNKLFADHPETLALEMTGYDGEKNIVSAVPLPEETFTVDISHGEDEKPVSYVVTLTLVNKLEFRKLRDYLSGNILSIPRNVLYGMDLVVKENPAKSTISLGRCFYPTNPPLVDNDLGHGIIAIGGFQHSLKPTSQGLAMCLDYSVLSFRKKLSVLDFLAAHIDGFNLAGFWKYKRQVEEALIGLKVNVTHRRTKQKYTIAKLTDREIQHITFPLVDLEGQNPPTDVSLVAYFKDKHGVVIKHKDIPALQFGGNKMNYVPMELCVLVEGQRFPKEYLDRNASRTLKDMSLARPWDREALIQRMIKSSDGPCGGGILQNFGMNVNTTMTNVTGRVIGPPKLKLGDPTGKIISMTVDPEKCQWNLLGRSMVEGKSVDCWGILDFTSQGPNWNKLKGDQFIWKLIEKYRKLGINMADPVHIEHSTMRKLGDYGSLCKLLEKINDGVYKKCRRRLQFLLCVMANKDPGYKWLKWISETKVGIVTQCCLSGNANEGKDQYLTNIALKINAKLGGSNVELNSRLPHFEGEGHVMFIGADVNHPGSRDVDSPSIAAVVATVNWPAANRYAARVCAQEHRKEKIVNFGEICYELVQCYDGLNKVRPEKIVIFRDGVSESQFHMVLTEELLDLKKVFERSNYFPTITLIVAQKRHQTRLFPAGRNEGTSGGNVFPGTVVDTKIIHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHNFTSDGLQELIYNMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEANIGVQSPYSAASSSPMVASSSLSSTTSISKDLDCYKLHADVQNGMFFI* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0828 1023 CDD Piwi_ago-like 537 972 IPR045246 -
Lan17g0828 1023 ProSiteProfiles Piwi domain profile. 675 974 IPR003165 GO:0003676
Lan17g0828 1023 MobiDBLite consensus disorder prediction 1 138 - -
Lan17g0828 1023 CDD PAZ_argonaute_like 376 489 - -
Lan17g0828 1023 Gene3D - 745 1023 IPR036397 GO:0003676
Lan17g0828 1023 MobiDBLite consensus disorder prediction 54 74 - -
Lan17g0828 1023 SUPERFAMILY PAZ domain 371 528 IPR036085 GO:0005515
Lan17g0828 1023 Pfam N-terminal domain of argonaute 174 311 IPR032474 -
Lan17g0828 1023 ProSiteProfiles PAZ domain profile. 400 490 IPR003100 GO:0005515
Lan17g0828 1023 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 135 1022 - -
Lan17g0828 1023 MobiDBLite consensus disorder prediction 1 19 - -
Lan17g0828 1023 Gene3D - 556 738 - -
Lan17g0828 1023 SUPERFAMILY Ribonuclease H-like 669 974 IPR012337 -
Lan17g0828 1023 Gene3D paz domain 370 494 - -
Lan17g0828 1023 SMART DUF1785_2 321 374 IPR014811 -
Lan17g0828 1023 SMART Piwi_a_2 675 973 IPR003165 GO:0003676
Lan17g0828 1023 Pfam Argonaute linker 1 domain 323 373 IPR014811 -
Lan17g0828 1023 Pfam PAZ domain 395 506 IPR003100 GO:0005515
Lan17g0828 1023 MobiDBLite consensus disorder prediction 78 92 - -
Lan17g0828 1023 MobiDBLite consensus disorder prediction 105 121 - -
Lan17g0828 1023 Pfam Piwi domain 676 970 IPR003165 GO:0003676
Lan17g0828 1023 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 135 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0828 Lan-Chr17 10144686 10150873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0828 123 974 Eukaryotic Initiation Factors Gene Family AT1G48410 33.919 3.69e-147 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0828 K11593 - gmx:100805250 1276.54