Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan17g0817 | ATGGCAGATAAACTCGCTATTCGAGACTCGTGGGATAGAAAACTCAAGAGAAAGATTGATGAGACATCTATGATAGACAAAGATTCAAATTTGTTACTTTCTCTAAGTCTTGGTTGTAGCAACACCTCAGAAGAACCATTATCCAATAGGAAGGCACATGAGGATTCAGATTTTGATCCAAAACTTGTTGAAAACTCCGACAACAAGGGAGTGATCAAACCTAACGAGCATGAATTCTCATGCAAGTTTTGCGACAAGAAATTTCACAACTTTCAAGCCTTGGGAGGACACCAAAACGCTCATAGGCGTGAAAGAATCTTTTCAAGGATGAACAAAGAAATTGCTATGGGTACTTTTGGATTCAGTGCTTACCCGTGTCCGTGCTCATCCATGGAAAATCTTCATCCTTTTCGTGGTTCACCCTGCTATCATACGGCTCATATGAACCCTATGGCTCACATGTCTCCTATGCCTTGGAGTCATTCCAGACCTGGTTATGGAAATCAAGGGATGTACAACACACCCTTCTCTGGTCACCAATTTGGGATAACTTCCAATTCGAGTGCAAGTGCCCAAACTCCACAGAAGATAAATCACAATGGTGTGGGCTTTGGTTATGAACCTTATCAAACCTCTTCACTTAAAGATGTAGTTAATAAATCTACTACTCCTCACAATGATCTTGAAGGCCATCGAAGAAATCAGTATACTAGTAACTAA | 720 | 0.4069 | MADKLAIRDSWDRKLKRKIDETSMIDKDSNLLLSLSLGCSNTSEEPLSNRKAHEDSDFDPKLVENSDNKGVIKPNEHEFSCKFCDKKFHNFQALGGHQNAHRRERIFSRMNKEIAMGTFGFSAYPCPCSSMENLHPFRGSPCYHTAHMNPMAHMSPMPWSHSRPGYGNQGMYNTPFSGHQFGITSNSSASAQTPQKINHNGVGFGYEPYQTSSLKDVVNKSTTPHNDLEGHRRNQYTSN* | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan17g0817 | 239 | Pfam | C2H2-type zinc finger | 79 | 104 | - | - | |
| Lan17g0817 | 239 | Gene3D | Classic Zinc Finger | 56 | 117 | - | - | |
| Lan17g0817 | 239 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
| Lan17g0817 | 239 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 81 | 101 | IPR013087 | - | |
| Lan17g0817 | 239 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 239 | - | - | |
| Lan17g0817 | 239 | PANTHER | ZINC FINGER PROTEIN JAGGED | 1 | 239 | IPR045320 | GO:0003700 | |
| Lan17g0817 | 239 | SUPERFAMILY | beta-beta-alpha zinc fingers | 75 | 107 | IPR036236 | - | |
| Lan17g0817 | 239 | MobiDBLite | consensus disorder prediction | 219 | 239 | - | - | |
| Lan17g0817 | 239 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 79 | 106 | IPR013087 | - | |
| Lan17g0817 | 239 | MobiDBLite | consensus disorder prediction | 47 | 69 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan17g0817 | Lan-Chr17 | 9791164 | 9791883 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan17g0817 | 79 | 206 | C2H2 Transcription Factor Family | AT1G66140 | 34.815 | 1.65e-09 | 55.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan17g0817 | - | - | lang:109350422 | 242.662 |