Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0806 ATGGAGGAGAAGAAATTTGTGTGCAAGTTTTGCAGCAAGAAATTTCCTTGTGGGAAGAGTTTAGGTGGCCACATAAGGACTCATATGAGTGAACAAAGGAATAATAGTATTAATAATAATGATGCTGAATGTGATAATCTGAACTTGGATGTTGTGAGAATGAAGCAGAAGAGAGATTTATGGTGTGAAGCTGGTTATGGTCTTAGAGAGAATCCTAAGAAAACAATGAGGTTTGTGCATTCCAAAGCCATTTTGGAACAACAACAAGAGGAGAAGTTCTGCAAAGAATGTGGAAAAGGTTTTCCTTCATTGAAAGCACTTTGTGGCCACATGGCATGTCATTCTGAGAAGCAGAAATTGGTTATGGATAGTCATTCTGATACCGAGGAGAGTTCTGATATTTCAAAGCATCCAAGAAGATCTAAGAGAATGAAGTTCAAGACCCTTTGCATTAGCAATGATCAGAGATATTCTTCTTCTGTGTCAGAGGTGGATCAGGAACAAGAAGAGGTTGCAAGGTGTTTGATGTTGTTGTCCAATGATTCTAGTCATAAGGGTGGTTTTGCTTTGATTGATGAGTCTTCTGAAAACAACTTAGTTGTAGTAGAAGAAGCAAAATCATCATCTGTTGATTTGAGGAATGGTGTTAAAAATGTGAACAAGTTCGTGTCTAATGGTTATGATCTTGTGGAGAAGAAGGAGCTGAAGTTAAAGTCTGCTGATAACTCAGATTCTGGGTATTACAGATATGATCCTCAAACCAAAATGGCAAAATCAGATGCTTCGAAAGATGAGTTTAAGTCTGAATTCGACGATTACGATGTTGAATCCGGGAAGATGCTGAACATGAATAAAGAGAGAAGCAAATACACTGTAACTTTATTTAAGAAATCAGTGAATAAGGATTTGAATTATGATGGAACAGGTGGAACTACAAGCAGGTTTGATTCTATGAAGATAGCCAACTATGATTCTTTCAATCATAGCAAAAAGATGACAAATGGTTTTGCCAATGATGAAATATATGAGACTGGTGAAAGGGGATTGAAGTATGAGAGTTTAGCTTATGATTCAACATATGAGAGTGATGAAAGCAGCTCAGACACTGATTCATTTCCTGCTCCGAAGTCTCATAGCAGTAAAGTTCTGAATGGAAAGAAGTGTAGCAAGGCTAAGAAAAAGAAGTTGAAGTCAAAGAAAAGCAAGGAACATGAGTGTCCAATCTGCTACAAGATTTTCAAGTCAGGCCAAGCCTTAGGAGGCCATAAAAGATCCCATTTTATTGGAGGTTCTGAAGAAAACACTGTGATCATCAACCAAGGTCCTTGCCTTATTGATCTCAATCTACCAGCTCCTATTGATGAATAG 1368 0.3765 MEEKKFVCKFCSKKFPCGKSLGGHIRTHMSEQRNNSINNNDAECDNLNLDVVRMKQKRDLWCEAGYGLRENPKKTMRFVHSKAILEQQQEEKFCKECGKGFPSLKALCGHMACHSEKQKLVMDSHSDTEESSDISKHPRRSKRMKFKTLCISNDQRYSSSVSEVDQEQEEVARCLMLLSNDSSHKGGFALIDESSENNLVVVEEAKSSSVDLRNGVKNVNKFVSNGYDLVEKKELKLKSADNSDSGYYRYDPQTKMAKSDASKDEFKSEFDDYDVESGKMLNMNKERSKYTVTLFKKSVNKDLNYDGTGGTTSRFDSMKIANYDSFNHSKKMTNGFANDEIYETGERGLKYESLAYDSTYESDESSSDTDSFPAPKSHSSKVLNGKKCSKAKKKKLKSKKSKEHECPICYKIFKSGQALGGHKRSHFIGGSEENTVIINQGPCLIDLNLPAPIDE* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0806 455 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lan17g0806 455 SMART c2h2final6 404 426 IPR013087 -
Lan17g0806 455 SMART c2h2final6 92 114 IPR013087 -
Lan17g0806 455 SMART c2h2final6 6 28 IPR013087 -
Lan17g0806 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Lan17g0806 455 SUPERFAMILY beta-beta-alpha zinc fingers 93 426 IPR036236 -
Lan17g0806 455 ProSitePatterns Zinc finger C2H2 type domain signature. 406 426 IPR013087 -
Lan17g0806 455 MobiDBLite consensus disorder prediction 361 382 - -
Lan17g0806 455 Gene3D Classic Zinc Finger 1 59 - -
Lan17g0806 455 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Lan17g0806 455 MobiDBLite consensus disorder prediction 361 396 - -
Lan17g0806 455 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 455 - -
Lan17g0806 455 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lan17g0806 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lan17g0806 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 404 426 IPR013087 -
Lan17g0806 455 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 455 - -
Lan17g0806 455 Pfam C2H2-type zinc finger 94 116 - -
Lan17g0806 455 Pfam C2H2-type zinc finger 404 426 - -
Lan17g0806 455 Pfam C2H2-type zinc finger 6 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0806 Lan-Chr17 9655344 9657407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0806 1 455 C2H2 Transcription Factor Family AT1G26610 42.159 2.52e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan17g0806 zf-C2H2_6 4.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0806 - - lang:109331689 856.67