Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0788 ATGGAAGAATTGACAGAACAAATGCAAAACCTGAGATCCAAGGCAACAGAACTTTTCATCAGAGAAGAATGGAAAGACTCCATTGAAGCCTATTCTCATTTTATAACTCTTTCTACACAAAACCAAACACCCTCTGATCCAGATCAACTTCAAAAGCTTCACAAATCCCTCTGCATTGCATTCTGCAACCGCGCTGAAGCAAGGTTCAAATTGGGGTACTTACACTGTGCCTTGCAAGATTGTGAGCATGCTTTGAAGATTGATGGGACCCATTTCAAAACCCTGCTATGTAAAGGTAAGATCTTGCTCAACCTCAATAGGTACCCTTATGCTCTAGAATGCTTTAGAACTGCACTTGTTGATTCTCAAGCTGGTGGGAACTCTGAAATGCTTAATGGGTATGTGGAGAAATGTAAAAAGTTTGAGTTTTTATCGAGAACTGGGTCAATTGATCTCTCAGACTGGGTTGCATCTGGGTTTCAAGGTAAGGCTCCTGAACTTGCTGAACACATTGGTCCAGTTCAGATAAGGAAATCTGAGATCAGTGGGCGCGGCATGTTTGCAACTAAGAACATTGATGCAGGGTCATTGATTTTGGTCACAAAAGCAATAGCCATGGAGAGGAGTATTTTGGGAGGTAAAGATTTAAGTGAGGATGCACAATTAGTAATGTGGAAGAATTTCATTGATAAAGTTGTGGACTTTATTAGAAAGTGTCCGAAAACGAGGGATTTGATTGGTAAGTTGTCAAGTGGGGAAGATGAGGAAGGGCTTGAGGTTCCTGATATAGATATCTTTAGACCAGAGAGTTTGGAGAATATGGAGTCAATTGGGGAGATTGATATGGGTAAGTTATTTGCCATATTAGATGTCAATTCTCTCACTGAGGATGCTGTTTCTGCTAATGTGTTGAGAAAGAACAATGATTGCTATGGTGTTGGGCTGTGGTTGCTCCCTTCCTTCATCAACCATTCATGCTGCGCCAATGTGCGGCGGTTGCATGTGGGGGACTACTTGATAGTTCATGCTTCTAAGGATTTGAAGGCTGGTGAAGAGATTACTTTGTCGTATTTTGATCCGCTATGTCCATTGCATAAGCGAAGGGAGATGTCAATGACATGGGGAATTCATTGTAAGTGTAAGAGGTGCGTGTTTGAGGAGGAAATGTTCTTGAAACAAGAGATAAAAGAGATCGAGATCGGTCTTGAAAGAGGGATGGAATGTGGTGGGGTAGTGTATAAATTAGAGGAACATATGAAGAGGTGGAATGTGAGGGGGAAAGGAAAAGCCTATTTGAGGGCATCGTTTTGGTCGGCTTATTCGGAGGCCTATAGCTCAGATAGGTGTATGAAGAGGTGGGGAAGGAGAATTCCTGCATTTGATGCTTTGATTGATAGCATCATAGATGTAGTGGGAGGTGATCACAGGTTACTTAAGATCCTGATGGAGGAGTTGAAGAAAAATGGTGGTGGCTTTGTGGAGATGGAGAAAGCTTTGAAGTTGGCAAGAGAGGTGTATGGAAAGGTGGTGAAAAAGAAAGCAATGAGGACACTTCTTGAGCTATGCATTGGTGCTTGA 1578 0.4221 MEELTEQMQNLRSKATELFIREEWKDSIEAYSHFITLSTQNQTPSDPDQLQKLHKSLCIAFCNRAEARFKLGYLHCALQDCEHALKIDGTHFKTLLCKGKILLNLNRYPYALECFRTALVDSQAGGNSEMLNGYVEKCKKFEFLSRTGSIDLSDWVASGFQGKAPELAEHIGPVQIRKSEISGRGMFATKNIDAGSLILVTKAIAMERSILGGKDLSEDAQLVMWKNFIDKVVDFIRKCPKTRDLIGKLSSGEDEEGLEVPDIDIFRPESLENMESIGEIDMGKLFAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCCANVRRLHVGDYLIVHASKDLKAGEEITLSYFDPLCPLHKRREMSMTWGIHCKCKRCVFEEEMFLKQEIKEIEIGLERGMECGGVVYKLEEHMKRWNVRGKGKAYLRASFWSAYSEAYSSDRCMKRWGRRIPAFDALIDSIIDVVGGDHRLLKILMEELKKNGGGFVEMEKALKLAREVYGKVVKKKAMRTLLELCIGA* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0788 525 SUPERFAMILY SET domain 173 383 IPR046341 -
Lan17g0788 525 Pfam SET domain 183 357 IPR001214 GO:0005515
Lan17g0788 525 Coils Coil 1 21 - -
Lan17g0788 525 Gene3D Tetratricopeptide repeat domain 1 141 IPR011990 GO:0005515
Lan17g0788 525 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 5 514 - -
Lan17g0788 525 Gene3D SET domain 268 389 IPR046341 -
Lan17g0788 525 CDD SET_SMYD 286 383 - -
Lan17g0788 525 SUPERFAMILY TPR-like 9 119 IPR011990 GO:0005515
Lan17g0788 525 ProSiteProfiles SET domain profile. 172 358 IPR001214 GO:0005515
Lan17g0788 525 SMART tpr_5 92 127 IPR019734 GO:0005515
Lan17g0788 525 SMART tpr_5 58 91 IPR019734 GO:0005515
Lan17g0788 525 SMART set_7 172 364 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan17g0788 SET 3.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0788 - - mtr:MTR_4g082140 805.438