Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0769 ATGTCTTCAAGGACATCTTCGTATTGGTGTTATAGGTGCAGCCGTTCAGTGAGGGTATTGATGCAGGACACGGTGGTTTGTCCCTATTGCGACGGCGGTTTTCTCGAGGAGATTGAGCATCCGGCGCGTGCTATTCACGTGGAAGAAGGCCGTCAGCGTTTCCCGGCAGCAGAGATGAACATGGGTGGTCAGCCCCCAAGTTTTGATCAGAATACTCGCCCCCATTTTCGTCGAAGCGGCCGCATCAGTAGTGACCGGTCACCGTTCAATCCGGTCATCATCTTGCGTGGCAGCCATGGTGGTTCCACGGAGGGGGATGCTGCTGCGGCTGCAGTGCAGGATGACCGGGATGGTCGTGGGTTTGAGCTTTTGTATGATGATGGTGCAGGTTCTGGTCTTAGGACTTTGCCTCCTAGCATGTCTGAGTTTCTTCTTGGATCTGGATTTGATAGGATATTGGAACAGCTTTCTCCAATTGAAATCAATGGTATTGGAAGGTCTGAACACCCTCCTGCTTCAAAAGCTGCAATTGATTCATTGCCAATAATTGAGATTGGTAAGAGTCATTTAGAATTGGAATCACATTGTGCTGTTTGTATGGATCCTTTTGAGTTATGCACTCCAGTTAGGGAAATGCCTTGTAAGCATATATATCATGAAGAATGCATTATTCCATGGCTTGTACTTCATAATTCATGCCCTGTTTGTCGTCGCGAATTGCCTGCTGCTAATATCCCCAATCAGATTACACCTTTAATGGGGAATTCAACAAATTCTGTTGCTATAAATGAAGATGGGAATGTAGGGTTAACTATTTGGAGGTTACCGGGTGGAGGGTTTGCTGTAGGGAGGTTATCTGGTGGCAGAAGAGGCGCTGAGAGAGAGCTTCCGGTTGTTTATACTGAAATGGATGGTGGTTTTAACAATGGGGGCGAGCCTAGGAGGATTTCTTGGTCATCTAGAGGGAATAGAGGAGGAAGAGAGAGTGGTGGTCTGCGTAGGTTTTTCCAGAACATGTTTGGTTGCTTAAGAGGTGGTGGAGTTGGAACTAGGCAACCTATTTCGAGTACTGCATCTCCATCCATCACAAGGGCAAGTTCATCGCATTCCAATGCGAATCCCTCTGTGCGTTCTCGCAGAACTTGGTCTATGGATGTGAACAGTGGACTGAGGTCATGGTAA 1182 0.4746 MSSRTSSYWCYRCSRSVRVLMQDTVVCPYCDGGFLEEIEHPARAIHVEEGRQRFPAAEMNMGGQPPSFDQNTRPHFRRSGRISSDRSPFNPVIILRGSHGGSTEGDAAAAAVQDDRDGRGFELLYDDGAGSGLRTLPPSMSEFLLGSGFDRILEQLSPIEINGIGRSEHPPASKAAIDSLPIIEIGKSHLELESHCAVCMDPFELCTPVREMPCKHIYHEECIIPWLVLHNSCPVCRRELPAANIPNQITPLMGNSTNSVAINEDGNVGLTIWRLPGGGFAVGRLSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGGRESGGLRRFFQNMFGCLRGGGVGTRQPISSTASPSITRASSSHSNANPSVRSRRTWSMDVNSGLRSW* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0769 393 SUPERFAMILY RING/U-box 176 242 - -
Lan17g0769 393 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Lan17g0769 393 MobiDBLite consensus disorder prediction 311 330 - -
Lan17g0769 393 MobiDBLite consensus disorder prediction 347 381 - -
Lan17g0769 393 MobiDBLite consensus disorder prediction 350 381 - -
Lan17g0769 393 MobiDBLite consensus disorder prediction 62 83 - -
Lan17g0769 393 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Lan17g0769 393 Pfam Ring finger domain 195 237 IPR001841 -
Lan17g0769 393 SMART ring_2 196 236 IPR001841 -
Lan17g0769 393 Pfam Protein of unknown function (DUF1117) 268 371 IPR010543 -
Lan17g0769 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 243 IPR013083 -
Lan17g0769 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 340 - -
Lan17g0769 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0769 Lan-Chr17 8574835 8576970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0769 150 245 C3H Transcription Factor Family AT3G02340 44.330 1.32e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0769 - K11982 gmx:100807324 508.834