Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0738 ATGGCTCAGGTTCAACCTCAGAATGCGATTCAGGGTGGTCCTAACGGTGCTGGTGGTGCTGGTAACCATTTCGTGACGACGTCGCTTTACGTCGGAGATCTTGACCCAAGCGTAACCGATTCGCAGCTCTATGACCTGTTCAACCAGTTAGGTCAGGTCGTGTCTGTTAGGGTTTGCAGGGACTTAACCACTGGAAGATCACTTGGTTATGGTTATGTCAATTACAGCAATCCCCAAGATGCTGCCAGATCATTGGATGTTCTGAACTTCACTCCTCTCAATAACAAGCCCATACGTATCATGTATTCTCACCGTGATCCCAGTATCCGTAAAAGTGGAGCAGGAAATATTTTCATTAAGAATTTGGACAGGACGATTGACCACAAGGCATTACATGATACATTTTCTTCATTTGGGAGCATCCTTTCTTGCAAGGTGGCTACAGATTCTTCTGGTAACTCGAAAGGCTATGGGTTTGTACAATTTGATAATGAAGAATCTGCTCAAAAAGCCATTGAGAAGTTGAATGGTATGCTGTTGAATGATAAGCAAGTTTACGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAGGTTCAGCTGACAAGGCAAAATTCAACAATGTTTTTGTAAAGAATCTGTCTGAATCAACCACTGAAGATGAACTGGAGAAGGTTTTTGGTGAGTTTGGACCAATTACCAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAGGTGCTTTGGATTTGTAAACTTCGAGAATACGGATGATGCTGCTCAGTCTGTTGAGGCTCTTAATGGCAAGAAGTTTGATGACAAAGAGTGGTACGTTGGCAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAAATTAAATTTGAGCAGAGCATGAAGGAAGCCGCTGATAAATATCAAGGGGCAAACTTGTATATCAAAAATTTAGATGATAGCATTGGTGATGAAAAACTTAAGGAGCTGTTCTCGTCTTTCGGTACCATTACCTCTTGCAAGGTTATGAGAGACCCCAATGGCATAAGTCGAGGATCAGGATTTGTTGCATTCTCAACCCCTGAGGAGGCATCTAGAGCTCTCTTGGATATGAATGGAAAAATTGTGGTAAGCAAACCTCTATATGTGACTCTGGCCCAAAGGAAAGAGGATAGAAGAGCTAGACTGCAGGCTCAATTTTCCCAAATGCGCCCTGTTACAGTGGCACCCTCTGTTGCTCCTCGTGTGCCAATGTACCCACCTGGTGGTCCAGGTATTGGTCAACAAATATTTTATGGTCAAGGGCCTCCTGCTATGATTCCTTCCCAGCCTGGATTTGGGTATCAACAGCAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCCATGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGGCAGCGTCCTGGTGGAAGACGTGCAGGAGGAGTTCAGCAGTCCCAGCAGCCTGTTCCTCTTATGCCACAGCAGATGCTTCCTCGAGGACGTGTGTATCGTTATCCTCCTCCTGGTAGGGGTATTCCTGAAGTTCCCATCCCCGGGGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTGGGTGGGATACCAATTCATGATGCAGGACTCTCCCAGCAAGTTCCTATTGGAGCTTTGGCTTCTGCTCTGGCAAATGCTTCCCCTGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTATCCTCTCGTGGAACAGTTAGAGCCTGATAATGCTGCCAAGGTCACTGGCATGCTTTTGGAGATGGACCAGACTGAAGTGCTGCACTTGCTCGAGTCACCTGAAGCCCTGAAAGCGAAGGTGGCTGAGGCGATGGATGTCCTGAGGAATGTTGCACAGCAGCAGGCTGGTGGTGCAGCCGATCAGCTGTCTTCATTATCACTCAATGACAACCTTGTTTCTTGA 1947 0.4669 MAQVQPQNAIQGGPNGAGGAGNHFVTTSLYVGDLDPSVTDSQLYDLFNQLGQVVSVRVCRDLTTGRSLGYGYVNYSNPQDAARSLDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRTIDHKALHDTFSSFGSILSCKVATDSSGNSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQEREGSADKAKFNNVFVKNLSESTTEDELEKVFGEFGPITSAVVMRDGDGKSRCFGFVNFENTDDAAQSVEALNGKKFDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYIKNLDDSIGDEKLKELFSSFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLDMNGKIVVSKPLYVTLAQRKEDRRARLQAQFSQMRPVTVAPSVAPRVPMYPPGGPGIGQQIFYGQGPPAMIPSQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRAGGVQQSQQPVPLMPQQMLPRGRVYRYPPPGRGIPEVPIPGVAGGMFSVPYDVGGIPIHDAGLSQQVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDNLVS* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0738 648 MobiDBLite consensus disorder prediction 471 490 - -
Lan17g0738 648 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 623 IPR006515 GO:0003723
Lan17g0738 648 Gene3D - 20 115 IPR012677 -
Lan17g0738 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Lan17g0738 648 PANTHER RNA BINDING PROTEIN 16 632 - -
Lan17g0738 648 Gene3D - 546 629 - -
Lan17g0738 648 SUPERFAMILY PABC (PABP) domain 490 640 IPR036053 GO:0003723
Lan17g0738 648 CDD RRM1_I_PABPs 28 107 - -
Lan17g0738 648 PANTHER POLYADENYLATE-BINDING PROTEIN 16 632 - -
Lan17g0738 648 SMART poly_2 562 625 IPR002004 GO:0003723
Lan17g0738 648 SUPERFAMILY RNA-binding domain, RBD 202 288 IPR035979 GO:0003676
Lan17g0738 648 Gene3D - 192 292 IPR012677 -
Lan17g0738 648 Gene3D - 116 188 IPR012677 -
Lan17g0738 648 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676
Lan17g0738 648 CDD RRM3_I_PABPs 205 284 - -
Lan17g0738 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723
Lan17g0738 648 Gene3D - 293 395 IPR012677 -
Lan17g0738 648 CDD RRM4_I_PABPs 308 386 - -
Lan17g0738 648 SUPERFAMILY RNA-binding domain, RBD 305 402 IPR035979 GO:0003676
Lan17g0738 648 SMART rrm1_1 310 382 IPR000504 GO:0003723
Lan17g0738 648 SMART rrm1_1 28 101 IPR000504 GO:0003723
Lan17g0738 648 SMART rrm1_1 116 188 IPR000504 GO:0003723
Lan17g0738 648 SMART rrm1_1 207 279 IPR000504 GO:0003723
Lan17g0738 648 CDD RRM2_I_PABPs 113 189 IPR045305 -
Lan17g0738 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Lan17g0738 648 SMART rrm2_1 116 188 IPR003954 GO:0003676
Lan17g0738 648 SMART rrm2_1 207 279 IPR003954 GO:0003676
Lan17g0738 648 SMART rrm2_1 310 382 IPR003954 GO:0003676
Lan17g0738 648 SMART rrm2_1 28 101 IPR003954 GO:0003676
Lan17g0738 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Lan17g0738 648 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Lan17g0738 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Lan17g0738 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Lan17g0738 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Lan17g0738 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Lan17g0738 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0738 Lan-Chr17 6876405 6881553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0738 26 647 Eukaryotic Initiation Factors Gene Family AT1G49760 74.367 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0738 K13126 - gmx:100813735 1095.11