Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0733 ATGGCTTCTTCTCTTTCCCTTTCTCTCACTCTCTCTCCTTCCTCTTCTCTTTACAAATCCATAGTCTCTTCTTCATCTTCACACTTTAACCCTCGTCCTTCATTCCCTTTCCATTTCCACATCTCACACAACCACCTTAAGCTTCAAAACCCTCTTCTCTTACCCCCGATTCGATCCATCCCTCAAGAAATTAGAGCTACACCAGTTACCAAAGACCTGTGGGAAAATTCAATTCTGAACAGTGAAACCCCAGTTCTTGTTGAATTCTATGCAAGTTGGTGTGGCCCATGTAGGATGGTTCACCGGATAATTGACGAGATTGCAACAGAGTATGCTGGGAAACTTCAGTGCTTCCTACTCAACACAGAGACTGATATGGAAATTGCTGAAGACTACGAAATCAAGGCTGTACCAGTGGTTTTGCTGTTTAAGAATGGCAAAAAATGTGATACTGTAATTGGTACCATGCCAAAGGAGTTTTATGTGGCTGCTATTGAGAGGGTGTTGAGTACCTAA 516 0.4264 MASSLSLSLTLSPSSSLYKSIVSSSSSHFNPRPSFPFHFHISHNHLKLQNPLLLPPIRSIPQEIRATPVTKDLWENSILNSETPVLVEFYASWCGPCRMVHRIIDEIATEYAGKLQCFLLNTETDMEIAEDYEIKAVPVVLLFKNGKKCDTVIGTMPKEFYVAAIERVLST* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0733 171 PANTHER GEO12009P1 54 170 - -
Lan17g0733 171 SUPERFAMILY Thioredoxin-like 53 170 IPR036249 -
Lan17g0733 171 ProSiteProfiles Thioredoxin domain profile. 48 170 IPR013766 -
Lan17g0733 171 TIGRFAM thioredoxin: thioredoxin 71 167 IPR005746 GO:0015035
Lan17g0733 171 CDD TRX_family 76 166 - -
Lan17g0733 171 PRINTS Thioredoxin family signature 85 93 - -
Lan17g0733 171 PRINTS Thioredoxin family signature 93 102 - -
Lan17g0733 171 PRINTS Thioredoxin family signature 133 144 - -
Lan17g0733 171 PANTHER THIOREDOXIN M3, CHLOROPLASTIC 54 170 - -
Lan17g0733 171 Gene3D Glutaredoxin 66 170 - -
Lan17g0733 171 ProSitePatterns Thioredoxin family active site. 86 104 IPR017937 -
Lan17g0733 171 Pfam Thioredoxin 68 165 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0733 Lan-Chr17 6807460 6810014 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0733 K03671 - gmx:100306680 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0554 17 4493165 4499666 Lan17g0733 17 6807460 6810014 PCT
Lan6g0526 6 4573298 4579555 Lan17g0733 17 6807460 6810014 PCT
Lan17g0733 17 6807460 6810014 Lan17g0554 17 4493165 4499666 PCT
Lan17g0733 17 6807460 6810014 Lan6g0526 6 4573298 4579555 PCT