Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0726 ATGTATCCTTTAACTCGTCTCACCTCCGAGCAAGAACTCTCAGTCATTGTTGCAGCCCTCACCAATGTTGTCACGGGATCCACATCTACCTCCCTGGACACCACCTCAAATAATGTCATCTCTCAATTCTCCTCACAGCTAACGTCACAAGCAACCTCTGCTACCACAGGAGGAACCACCTCCGATCAAAGAATACTTCCGACCTCGAACATAGTAACATGCAGCGAATGCAATATCGCCGGGTGCTTAGGCTGTAGCTTCTTCTCCGAGGAGAAGAAGCTACAGAAGCAAGCGAAAAGGAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCGGAGATTCGAGACCCGAGGCGTGCAGCACGAGTGTGGCTCGGGACATTCAGCACGGCTGAGGATGCTGCCAGGGCTTATGACAAGGCCGCCATCGAGTTCCGGGGGGCGCGAGCCAAGCTCAACTTTCCGGTGATTGATGATTCGCTTATAGTGGAGGCACATAAGGGAAACATGAATGTGTTGAATGCAGAAGAGGAAGTAGTAAAGGATGATAACTTAAGTAAGGGAATGGAAATGAAAACAGTAGGAATGTTTGGGAATAAGGAAAGTGAATTTTGGGATAGGATCGGAGAAGATGATTTTCATCAGCTTATGATGATGGATTTTGGCGGAGATTCTTCCCACTCTGCTGCGGGGAACACGTCCGGTTCTTGA 720 0.4958 MYPLTRLTSEQELSVIVAALTNVVTGSTSTSLDTTSNNVISQFSSQLTSQATSATTGGTTSDQRILPTSNIVTCSECNIAGCLGCSFFSEEKKLQKQAKRKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFSTAEDAARAYDKAAIEFRGARAKLNFPVIDDSLIVEAHKGNMNVLNAEEEVVKDDNLSKGMEMKTVGMFGNKESEFWDRIGEDDFHQLMMMDFGGDSSHSAAGNTSGS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0726 239 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Lan17g0726 239 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Lan17g0726 239 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Lan17g0726 239 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Lan17g0726 239 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Lan17g0726 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 5 233 - -
Lan17g0726 239 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Lan17g0726 239 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 233 - -
Lan17g0726 239 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
Lan17g0726 239 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0726 Lan-Chr17 6697364 6698301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0726 2 161 AP2-EREBP Transcription Factor Family AT4G34410 41.837 3.84e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan17g0726 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0726 - - gmx:100820426 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0802 6 7389538 7390652 Lan17g0726 17 6697364 6698301 LSH
Lan18g0478 18 9224007 9224937 Lan17g0726 17 6697364 6698301 LSH