Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0707 ATGGATGATGATAGCAGCAATTCTTGGATTAGGAGGGCAAAGTTCTCTCACACAGTATGTCACAGAATGGATTATTCCAGTTTGGGTTCTTTTCCAATCAGGAATTCAGGTCTGAAATCTAGGCCACTAGAAGATTCAGGTGTGAAATCTAGGCTACCGGAAGATTCGGGTTTGAAATCTAGGAAACTAGAAGTTTCAGGTCTGAAATCTACACCACTAGAATTAACTCCTCATAATCTAAAGCCTGTTGCTAAGGTTTCACAAGTTCAGAAAAATCTCATAACAAATAAGCAGAGATCCTTATCCCCTTTGCCCGAAACATTTGTTTCTCAAACCTTTAAGGAAGCCAGACATGAACAGAAGAGGTTCTCAACACCAGGTCCACAGAGGAAAAACCAGGATAATAAGATTATGTTTATGGGCAAGTTACTGAACAAGGATCCTCGGGAAATTAAGGTATCGAATCCAAAATCGCCTATTAAGCACTTTGCTTCAATGAAATCAGGTGACAAGTCAAAGCACCACAAGGAATCAGGATGGGCAAAGTATTTTGATCATGGTGGAGGAAGGGTTACTGCTGTTGAAACAGCTGAAGAATGGACTGTTGACCTCTCTAAGCTGTTTCTGGGTCTTAGGTTTGCTTATGGGGCTCATAGTCGGCTTTACCATGGTATGTATAACGAGGAACCTGTTGCTGTCAAAATTATCAGAGTACCAGATGAAGATGAAAACGGAGCATTGGCTTCTCGGTTAGAGAAACAGTTCATTAGAGAAGTCACACTTTTATCTCGCCTTCGCCATCCAAATGTTATCAGGTTCGTGGCAGCTTGCAGAAAGCCTCCGGTTTATTGTGTTATCACAGAATATTTATCAGAAGGTTCTTTGAGGGCATACTTGCATAAGTTGGAGAGAAAAACTGTTTCTCTACAAAAGCTAATTGCTTTTGCGATGGATATTGCTCGCGGAATGGAATACATACACTCTCAAGGTATCATTCATCGCGACCTTAAACCAGAGAATGTCCTTATTAATGAAGGCTTTCACCTTAGTATAGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGCGACTCACTAGCGGACGACCCTGGTACCTACCGCTGGATGGCACCTGAGATGATCAAACGTAAATCCTATGGGAGAAAGGTCGATGTATACAGTTTTGGTCTTATCTTATGGGAAATGTTGACCGGAACAATACCATACGAGGATATGACTCCCATCCAAGCTGCCTTTTCCGTAGTAAACAAGAATTCAAGACCTATTATTCCTTCAAACTGCCCACCCGCTATGCGAGCTTTAATTGAACAGTGTTGGTCCCTGCATTCTGATAAAAGGCCAGAGTTCTGGGAGATTGTTAAGGTATTAGAGCAATTTGAATCTGCACTCGCTCATGATGGAACCCTGACTCTAGTGCAAAGTTTGTTATGCCAAGATCATAAAAAGGGTATTCTTCATTGGATGCAAAGGCTTAGTCCTTCAAATCAACATAGTGGTCCTGTTCCAAAACCAAAATTCTCTTGA 1545 0.4155 MDDDSSNSWIRRAKFSHTVCHRMDYSSLGSFPIRNSGLKSRPLEDSGVKSRLPEDSGLKSRKLEVSGLKSTPLELTPHNLKPVAKVSQVQKNLITNKQRSLSPLPETFVSQTFKEARHEQKRFSTPGPQRKNQDNKIMFMGKLLNKDPREIKVSNPKSPIKHFASMKSGDKSKHHKESGWAKYFDHGGGRVTAVETAEEWTVDLSKLFLGLRFAYGAHSRLYHGMYNEEPVAVKIIRVPDEDENGALASRLEKQFIREVTLLSRLRHPNVIRFVAACRKPPVYCVITEYLSEGSLRAYLHKLERKTVSLQKLIAFAMDIARGMEYIHSQGIIHRDLKPENVLINEGFHLSIADFGIACEEAYCDSLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMLTGTIPYEDMTPIQAAFSVVNKNSRPIIPSNCPPAMRALIEQCWSLHSDKRPEFWEIVKVLEQFESALAHDGTLTLVQSLLCQDHKKGILHWMQRLSPSNQHSGPVPKPKFS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0707 514 SMART serkin_6 207 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0707 514 Pfam Protein tyrosine and serine/threonine kinase 215 463 IPR001245 GO:0004672|GO:0006468
Lan17g0707 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672|GO:0006468
Lan17g0707 514 Gene3D Transferase(Phosphotransferase) domain 1 292 493 - -
Lan17g0707 514 SUPERFAMILY Protein kinase-like (PK-like) 192 463 IPR011009 -
Lan17g0707 514 MobiDBLite consensus disorder prediction 150 175 - -
Lan17g0707 514 Gene3D Phosphorylase Kinase; domain 1 195 291 - -
Lan17g0707 514 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 490 - -
Lan17g0707 514 CDD STKc_MAP3K-like 216 463 - -
Lan17g0707 514 PRINTS Tyrosine kinase catalytic domain signature 287 300 IPR001245 GO:0004672|GO:0006468
Lan17g0707 514 PRINTS Tyrosine kinase catalytic domain signature 325 343 IPR001245 GO:0004672|GO:0006468
Lan17g0707 514 PRINTS Tyrosine kinase catalytic domain signature 371 381 IPR001245 GO:0004672|GO:0006468
Lan17g0707 514 PRINTS Tyrosine kinase catalytic domain signature 390 412 IPR001245 GO:0004672|GO:0006468
Lan17g0707 514 PRINTS Tyrosine kinase catalytic domain signature 434 456 IPR001245 GO:0004672|GO:0006468
Lan17g0707 514 MobiDBLite consensus disorder prediction 34 58 - -
Lan17g0707 514 MobiDBLite consensus disorder prediction 44 58 - -
Lan17g0707 514 ProSiteProfiles Protein kinase domain profile. 207 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0707 514 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0707 Lan-Chr17 6311449 6315338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0707 3 514 MAP Kinase Kinase Kinase AT5G58950 55.932 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan17g0707 PK_Tyr_Ser-Thr 6.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0707 - - lang:109331738 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0707 17 6311449 6315338 Lan6g0728 6 6626273 6629452 LSH
Lan17g0707 17 6311449 6315338 Lan6g1195 6 12033060 12040193 LSH
Lan17g0707 17 6311449 6315338 Lan4g0683 4 9317669 9321073 PCT
Lan17g0707 17 6311449 6315338 Lan19g0931 19 16683393 16686492 PCT
Lan4g0683 4 9317669 9321073 Lan17g0707 17 6311449 6315338 PCT
Lan19g0931 19 16683393 16686492 Lan17g0707 17 6311449 6315338 PCT