Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0704 ATGTCGAGTTGGTTCGGTTCTTCGTCCTCGGCTTCCATCAAGATGATCGTCACCAATACTCCCTCACAGGACCTTGCTCTCACCAACTTCGCCTTCTGTTCCCCCTCCGATCTCTCTAATTTCGCCGTCCCCGGTTCCAACAAGCTCTACCTCGCTCTCGTCGGCGATGCCTTCGTCTTCTCTCTCTCTGGCCATGAAACCATACGCAGTGGCCATATTGCGTTGAATTCCATTCAACGTCGTTGGGTTAAAGTTTCTTCTGCTGAATCCATATCTGTCACCAGATTCTTGCCACCTGAAAACTTCAACCTGGCATTGTTAACCCTTGAGTTGGACTTCATTAAAAGGGGGAGCAGGAGTGAACAGGTTGATGCTGTTCAACTGGCTAACCAACTTAGAAAGAGATTTATAAATCAGGTTATGACAGTAGGGCAAAAAGTGTTATTTGAGTATCACGGAAATAATTATAACTTTACAGTCAGTCAAGCTGCTGTTGAGGGCCAAGAAAACTCCAAGTCTCTCGAAAGAGGAATGGTTTCAGATGACACATACATTGTTTTTGAAACAGCACGTGATAGTGGAATTAAGGTTGTAAATCAGCGAGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTGAGTCTTTGGGCATTGGAGGTCTGAGTGCCGAGTTTGCAGATATATTTCGTAGAGCTTTTGCATCTCGTGTTTTTCCTCCCCATGTTACATCTAAATTAGGGATCAAACATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGAACTGGAAAGACCCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGAGCAGAGGAGCCGAGGTGATGAAAGTGATTTGCATGTTATAATCTTTGACGAAATTGATGCTATTTGTAAGTCAAGAGGTTCCACTCGAGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCTCTAAATAATGTCTTACTTATCGGAATGACCAATAGAAAGGACATGCTCGATGAAGCTCTCTTAAGACCAGGGCGGTTGGAGGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTAGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAGGAGAATTCCTTTTTGGCTCCTGATATAAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTATAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCGTATGCTTTAAATAGACAATTGAGTCTAGAAGATCTCACTAAGCCAGTAGAGGAAGAGAATATTAAGGTTACAATGGATGATTTTTTGAATGCACTGCATGAAGTAATTCCTGCATTTGGAGCTTCTACCGATGACCTTGAGAGATGCAGACTCCATGGCATGGTTGACTGTGGTGATCGACATAAACACATTTATCAAAGAGCAATGCTACTCGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACGTGTCTTCTGGAAGGTTCTAGGGGCAGTGGTAAAACTGCACTTGCAGCGACTGTTGGTATTGACAGTGACTTCCCATATGTCAAGATTGTTTCCGCTGAAACTATGATTGGTCTGCATGAGAGCACTAAATGTGCGCAGATTATTAAGGTTTTTGAGGATGCATACAGGTCACCATTGAGTGTCATTGTTCTTGATGACATCGAGAGGTTATTGGAGTATGTGTCAATTGGTCCTCGATTTTCAAACTTGATTTCTCAGACACTACTGGTCCTGCTCAAACGGCTTCCTCCAAAGGGCAAAAAACTCATGGTTATTGGCACAACGAGTGAAGTGGATTTCTTGGAATCGATTGGGTTTTGTGATATTTTCTCTGTCACTTACCATGTCCCTACCTTGAATACAAATGATGCAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGAAGATATTGATGCTGCTGCAGAGGTGTTGGGTGATATGCCTATAAGGAAGCTATACATGTTGATTGAGATGGCAGCACAAGGGGAGCAAGGAGGATCTGCAGAAGCTATCTTTTCTGGCAAAGAGAAGATTAAAATTTCTCATTTCTTTGATTGCCTTCAGGATGTTGTTAGAATATAA 2235 0.4219 MSSWFGSSSSASIKMIVTNTPSQDLALTNFAFCSPSDLSNFAVPGSNKLYLALVGDAFVFSLSGHETIRSGHIALNSIQRRWVKVSSAESISVTRFLPPENFNLALLTLELDFIKRGSRSEQVDAVQLANQLRKRFINQVMTVGQKVLFEYHGNNYNFTVSQAAVEGQENSKSLERGMVSDDTYIVFETARDSGIKVVNQREAATSNIFKQKEFNLESLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRSRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDINLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALHEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYRSPLSVIVLDDIERLLEYVSIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSEVDFLESIGFCDIFSVTYHVPTLNTNDAKKVLEQLNVFADEDIDAAAEVLGDMPIRKLYMLIEMAAQGEQGGSAEAIFSGKEKIKISHFFDCLQDVVRI* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0704 744 Gene3D - 495 666 IPR027417 -
Lan17g0704 744 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Lan17g0704 744 CDD AAA 527 653 - -
Lan17g0704 744 Gene3D - 9 96 - -
Lan17g0704 744 Gene3D - 99 197 - -
Lan17g0704 744 Gene3D - 206 398 IPR027417 -
Lan17g0704 744 CDD AAA 255 398 - -
Lan17g0704 744 Gene3D - 399 486 - -
Lan17g0704 744 Pfam AAA+ lid domain 424 479 IPR041569 -
Lan17g0704 744 SUPERFAMILY ADC-like 12 96 IPR009010 -
Lan17g0704 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 496 IPR027417 -
Lan17g0704 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 714 IPR027417 -
Lan17g0704 744 SMART AAA_5 533 671 IPR003593 -
Lan17g0704 744 SMART AAA_5 253 400 IPR003593 -
Lan17g0704 744 Pfam ATPase family associated with various cellular activities (AAA) 538 651 IPR003959 GO:0005524|GO:0016887
Lan17g0704 744 Pfam ATPase family associated with various cellular activities (AAA) 257 397 IPR003959 GO:0005524|GO:0016887
Lan17g0704 744 SMART CDC48_N_2 14 99 IPR003338 -
Lan17g0704 744 Pfam Cell division protein 48 (CDC48), domain 2 123 176 IPR004201 -
Lan17g0704 744 PANTHER BNAA03G50350D PROTEIN 61 743 - -
Lan17g0704 744 PANTHER BNAA03G50350D PROTEIN 7 40 - -
Lan17g0704 744 PANTHER VESICULAR-FUSION PROTEIN NSF 61 743 IPR039812 GO:0016887|GO:0035494
Lan17g0704 744 PANTHER VESICULAR-FUSION PROTEIN NSF 7 40 IPR039812 GO:0016887|GO:0035494
Lan17g0704 744 SUPERFAMILY Cdc48 domain 2-like 99 202 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0704 Lan-Chr17 6279183 6291193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0704 221 472 Calmodulin-binding Proteins AT3G56690 33.465 4.60e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0704 K06027 - gmx:100779259 1304.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0704 17 6279183 6291193 Lan6g0725 6 6599659 6610635 LSH