Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0700 ATGAGTTGTGGCTGCTTTGGAACTTCAACTCCGAAGAAGAAAAGGAGCACTTCTCGTACTACTAATGAAATAGATGGATACCCACTTGATAATGTTAGGCGTTTCTCTGATAAAGAATTGAGATTGGCCACTGACAATTATCATATGAGTAATAAGATTGGACGAGGAGGCTTTGGAACTGTTTTCCGGGGAACCTTAAAAAATCAGAGACAGGTAGCAGTGAAGACCCTTTTAGCTGGGTCAAGGCAGGGAGTTCGTGAATTTTTGGCTGAAATTAATACTCTATCACATGTTAAGCATCCAAACCTTGTTGAATTGATCGGCTGCTGTGTCGAAGGACCAAGTTGTGTATTAGTCTACGAGTACGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGCACAAGGACTTCAAACATCAGACTAGACTGGAGAAGAAGAGCTGGTATTTGCATGGGGACTGCTAGGGGTCTTGCATTTCTTCATGAAGAACTTGTCCCACATATTGTGCACAGAGACATAAAAGCTAGCAACATACTACTTGACGGAGACTTCAATCCAAAAATCGGCGATTTTGGGTTGGCAAAATTATTTCCAGATGACATCACTCACATTAGCACACGAGTTGCTGGAACAACTGGTTACTTAGCGCCTGAGTATGCAATGGGTGGAAAGTTAACCATGAAGGCTGATGTATATAGCTTTGGGGTTCTTATACTTGAAATAATTAGTGCCAAAAGCAGTGTGCGAGCTAACTGGGGAGGGTCACAGAAATTCCTCTTGGAATGGGCATGGCAACTTCATGAAGAGGGGAGACTATTGGAGCTTGTGGATCCAAACATGGTTGAATATCCTGAGGAAGAGGTAATTAGGTACATGAAGGTAGCTTTCTTCTGCACACAAGCAGCAGCAAGCAGAAGACCACTAATGTCTCAGGTTGTCGATATGCTATCGAAGAATATCCGCCTCAACGAGAAGCAACTTACAGCGCCCGGCTTCTTCCTTGATTCGGGAGAATCCGCAAGAAATAAGTCTTCATATGGTGGCTCTACAAGCTATCAATTTAGCTCTACTCCTGTCAGTATAACTCAGGTCACCCCAAGGTGA 1107 0.4336 MSCGCFGTSTPKKKRSTSRTTNEIDGYPLDNVRRFSDKELRLATDNYHMSNKIGRGGFGTVFRGTLKNQRQVAVKTLLAGSRQGVREFLAEINTLSHVKHPNLVELIGCCVEGPSCVLVYEYVENNSLDRALLGTRTSNIRLDWRRRAGICMGTARGLAFLHEELVPHIVHRDIKASNILLDGDFNPKIGDFGLAKLFPDDITHISTRVAGTTGYLAPEYAMGGKLTMKADVYSFGVLILEIISAKSSVRANWGGSQKFLLEWAWQLHEEGRLLELVDPNMVEYPEEEVIRYMKVAFFCTQAAASRRPLMSQVVDMLSKNIRLNEKQLTAPGFFLDSGESARNKSSYGGSTSYQFSSTPVSITQVTPR* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0700 368 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Lan17g0700 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lan17g0700 368 PIRSF ILK 11 329 - -
Lan17g0700 368 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0700 368 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lan17g0700 368 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0700 368 MobiDBLite consensus disorder prediction 345 368 - -
Lan17g0700 368 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Lan17g0700 368 Pfam Protein tyrosine and serine/threonine kinase 48 317 IPR001245 GO:0004672|GO:0006468
Lan17g0700 368 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Lan17g0700 368 MobiDBLite consensus disorder prediction 1 23 - -
Lan17g0700 368 CDD STKc_IRAK 53 319 - -
Lan17g0700 368 PANTHER - 1 358 - -
Lan17g0700 368 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0700 Lan-Chr17 6216842 6221734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0700 35 367 Receptor kinase-like Gene Family AT1G56120 50.450 2.88e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lan17g0700 PK_Tyr_Ser-Thr 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0700 - - gmx:100788143 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0700 17 6216842 6221734 Lan16g0128 16 1003534 1007398 PCT
Lan16g0128 16 1003534 1007398 Lan17g0700 17 6216842 6221734 PCT