Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0679 ATGGGGAGAGCACCATGTTGTGACAAGAATGGCCTTAAGAAAGGACCATGGACACCAGAAGAAGACCAGAAACTCGTTGATTACATTCAAAAACATGGCTACGGGAACTGGAGAACACTCCCAAAAAATGCTGGATTGGAAAGGTGTGGAAAAAGTTGCCGTCTTCGTTGGACAAACTATCTCAGGCCAGATATAAAGAGAGGTCGATTCACTTTTGAAGAGGAGGAAGCAATAATACAGCTACATAGTATTCTTGGCAACAAATGGTCTACCATTGCATCTCGCTTGCCAGGAAGAACAGATAATGAAATCAAGAACTATTGGAACACTCACATTCGAAAAAGATTGTTAAGGATGGGAATAGATCCTGTGACACATAGCCCAAGACTTGACCTATTGGACCTCTCTTCCATCCTAAGTTCATCTTTCTATGATTCATCACAAATGAACATCCAAAGGCTACTTGGTATGCAGCCTATGGTGAACCCTGAGCTTCTAAAGTTGGCTTCATCGATCTTCTCCTCTCATCAAGGTCAATACCCTACCAACATGGAATGTGCTCAAAATGGTGATCAAGAGAACCAGCACTGCAGTACACAATTTCAGAACCAAATCCAAAACTTTGAGCACACCCCTTGTGTTTCATTGCCTTTGACTCATTCACAATTGGTTGAATCCAATATGAACCAATACCCATCAGATTTCAATGACTTTAGTTCCCAACAACATTCTCATATGAGTGATTGGCATAGCAATGAAATTGCTTCAAGAACTGCTATTAATGAAGATTATGTCCCTCAATTACCAAGCTATAATTACTATGGTTCTGATTATCTTACAAATATTATGGACCCTCTTGTGTCCGAAACCTCAACTTTCTATTCCAATAACAGTAACCAGAACTTTAGCTTCACTTCAGTTCTATCAACACCTACATCAAGCCCCAAACCATTGAACTCAAACTCAACTTATATCAATGGGAGTAGCACTGAGGATGAGAGAGAAAGCTATGTCAGCAGTAGCATATTGGGATATGAAATCAGAAATATTCTAGGTGTGAATGAGATCATGTAA 1074 0.3985 MGRAPCCDKNGLKKGPWTPEEDQKLVDYIQKHGYGNWRTLPKNAGLERCGKSCRLRWTNYLRPDIKRGRFTFEEEEAIIQLHSILGNKWSTIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFYDSSQMNIQRLLGMQPMVNPELLKLASSIFSSHQGQYPTNMECAQNGDQENQHCSTQFQNQIQNFEHTPCVSLPLTHSQLVESNMNQYPSDFNDFSSQQHSHMSDWHSNEIASRTAINEDYVPQLPSYNYYGSDYLTNIMDPLVSETSTFYSNNSNQNFSFTSVLSTPTSSPKPLNSNSTYINGSSTEDERESYVSSSILGYEIRNILGVNEIM* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0679 357 CDD SANT 69 112 IPR001005 -
Lan17g0679 357 SMART sant 13 63 IPR001005 -
Lan17g0679 357 SMART sant 66 114 IPR001005 -
Lan17g0679 357 CDD SANT 16 61 IPR001005 -
Lan17g0679 357 Gene3D - 13 66 - -
Lan17g0679 357 PANTHER TRANSCRIPTION FACTOR MYB74 1 340 - -
Lan17g0679 357 Gene3D - 69 116 - -
Lan17g0679 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 340 - -
Lan17g0679 357 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan17g0679 357 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan17g0679 357 MobiDBLite consensus disorder prediction 311 332 - -
Lan17g0679 357 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan17g0679 357 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan17g0679 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan17g0679 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan17g0679 357 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0679 Lan-Chr17 5918248 5920040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0679 1 357 MYB Transcription Factor Family AT4G21440 52.688 5.52e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan17g0679 Myb_DNA-binding 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0679 K09422 - gmx:778071 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0679 17 5918248 5920040 Lan19g0979 19 17200223 17203833 PCT
Lan19g0979 19 17200223 17203833 Lan17g0679 17 5918248 5920040 PCT