Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0651 ATGGAAAGTGTGAATTCAAAGCAATCATGTGAGAAATTGATGATGGTTCCCATGCAAGTTGATGGGTCCTACCATGCCATTTCCAAGGGAAGTTCAGGTTCAGGTTCTGATGAAGAAGCTCGAGTGAATAGTTTTTCTCGTACCAGTGAACTTACAATTTCATTTGAAGGCGAGGTTTATGTTTTCCCTGCTGTTACACCAGAAAAGGTGCAGGCTGTATTATTACTCTTGGGAGGGCAGGAGATGCCCAATAGTGTTCCCAGCTCCTACTGTTCGCTTCAGCAGAACTATCGGGATATTGGGGGAATAAATGATCCTTCCCAAGGTTCAAAGCGTTCAAGGAGATTTGCATCACTTGCTAGGTTTCGTGAAAAACGGAAAGATAGGTGTTTTGAGAAGAAAATTCGGTACACTTGCCGTAAAGAGGTTGCGGAAAGGATGCATCGTAAGAATGGACAGTTTACATCACTGAAGGAAAACTACAAACCACCTGCAGAAAACTGTGGTTCAAGCAATGGTACTCCTTGCCCAGAATCTACTGAACGAAGATGCCAGCATTGTGGAATTGGCGAGAAGTCTACTCCTGCTATGCGTCGAGGACCAGCTGGTCCTAGATCTCTGTGCAATGCATGCGGGCTTATGTGGGCAAACAAGGGAACTTTGAGAGATCTCAGCAAAGCAGGAAAGATTGCTTTTGAACACAATGAACAGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAACCAGAAAATTGTTGTACTGACCAGGACAAAGAGTATATTATCGAAACTGCTGAAACGGTTACTAACAACTTATCCATCCAAGTGGAGCATCATGATCTTAGTGTGCATGAGCAGTTACAGGATACTCTTGAGGATCTTGCGGATGCTTCTGGGACAGAATTTGAAATTCCTGCTGGTTTTGATGAGCAGGTTGATATTGATGATTCCAACATGAGGACTTACTGGCTGTAA 978 0.4346 MESVNSKQSCEKLMMVPMQVDGSYHAISKGSSGSGSDEEARVNSFSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGQEMPNSVPSSYCSLQQNYRDIGGINDPSQGSKRSRRFASLARFREKRKDRCFEKKIRYTCRKEVAERMHRKNGQFTSLKENYKPPAENCGSSNGTPCPESTERRCQHCGIGEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGKIAFEHNEQDTSADIKPSTTEPENCCTDQDKEYIIETAETVTNNLSIQVEHHDLSVHEQLQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0651 325 CDD ZnF_GATA 183 226 IPR000679 GO:0006355|GO:0043565
Lan17g0651 325 ProSiteProfiles Tify domain profile. 44 79 IPR010399 -
Lan17g0651 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 232 - -
Lan17g0651 325 SMART tify_2 44 79 IPR010399 -
Lan17g0651 325 PANTHER GATA TRANSCRIPTION FACTOR 28 35 316 IPR045280 GO:0006355
Lan17g0651 325 ProSiteProfiles CCT domain profile. 115 157 IPR010402 GO:0005515
Lan17g0651 325 Pfam GATA zinc finger 184 220 IPR000679 GO:0006355|GO:0043565
Lan17g0651 325 Gene3D - 177 238 IPR013088 GO:0006355|GO:0008270
Lan17g0651 325 Pfam tify domain 48 78 IPR010399 -
Lan17g0651 325 Pfam CCT motif 115 156 IPR010402 GO:0005515
Lan17g0651 325 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 35 316 - -
Lan17g0651 325 ProSitePatterns GATA-type zinc finger domain. 184 211 IPR000679 GO:0006355|GO:0043565
Lan17g0651 325 SMART GATA_3 178 231 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0651 Lan-Chr17 5635430 5640858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0651 50 271 Tify Gene Family AT1G51600 52.402 2.61e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan17g0651 CCT 5.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0651 - - gmx:102669848 461.455