Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0645 ATGGACGGTGGCGGAAACCGAGCCGAGGCGGAGCGGTGGCTCTTCACGGCGAACAAGCTCCTTAGCGCGCGTGATCTACACGGAGCACGCTCCTTCGCGATCCGTGCCCGTGAATCTGATCCAACTTTCGATGCCTCTGAGCTTCTCGTCACGGTGATCGACACCGTCCTCGCCGGCGAGACTCGGATCAACGATCACCATCGCGACTGGTACGGGATCCTTCAGGTTCTCCGTTACACCACCAATATCGACCACATCGCCGCCCAGTACCGCCGCCTCGCCCTCCTCCTCGATCCTCATCGCAACCCCTTCGCTTTATCCAGCCATGCGTTCTCCCTCGTCCATGACGCTTGGTCCGTCCTCTCGGATTCCGTCAAGAAGGCCATGTACGACAACGATCTCCAATTACTCACTTCCCAAACACCGCCGCCTCAACAACCACAACCAACACCACCACCTCCTCAACAACGGCAACCACCACCACCACCTCTCCAGCCTCAGCCGCAACAAAAGAAAAACCCTAGGTCTAAAAATGTTTTGGCTGGACCGGGTCGAAACACTCGATCCGAGTCCTTGACCCAGCCAAAAGAGTTAGGTTGGACTGAGTCTGAGGGAGCGAGTTTCTGGACGTCGTGTCCTTACTGTTACGTTATGTACGAGTATCCGAAGGTGTACGAGGACTGTACCTTACGGTGCCAGAACTGTAGGAGAGGGTTTCATGCTGTGGTGATTCGATCGCCACCATTGAATGGGTTAGATGAATCCTTTTGCACTTGGGGTTTTTTACCGTTAGGGTTTTCTGGTGATTCGAAAGATATCAATGGGGTTGGTTCGAATTGGAACCCGTTTTCGCCGCTTTTCCCTTGCTCCTTGAAAGGGAATACCAAGAAGAAGAAGGATTGGGTTTATTATGATGACGAGGTTGCTACCGCATTTATCAATATTTCAGACCCTAGTGAGGATGATTCTGATGGAGACTGGAGAGGTGGAAAAAGCAGGGCGAGTAAGAGAGCAAGGAGTTCCAGGAAGAACTTCTCTGATGTTAAAAGGAAACCTGTACGGAGGCCTAGGAGGAGCAGTCATGGTGGTGGTGCCAGGACTGAGAATGCAGGTGGTGGTGTCGGGAATGAGAATGCGGGTGGTGGTGGTACTGGTAGTGTGACAGTGAATGGTATTGCGCCTGCAGTGCCTGATGGTATAAATGCAAGTGCAGGTACAAGTAAGAGGGCACAGCCTGGTAAGAGAGGTGCAGTGGGTGGTCCTAGGAGGAGGGGTGCAGGAAATTTGGGGAAGTTGGACTTGAATGTGGAGTTCAGTAATGATGCGGAAGAACGACAAGAGCCTTCTCATGCTGGCATGCGTGAAGGCAATCCAACTGGTCAGGCTGATGATAATATTGAAGGGATTGGGTTTTTTGAGGGTCTCGATGAGTTCCTCAGTAGCTTGCCCATTCTCAATGTTGTGGGAGATGATAAGGTTAAGGATCATTAA 1491 0.5198 MDGGGNRAEAERWLFTANKLLSARDLHGARSFAIRARESDPTFDASELLVTVIDTVLAGETRINDHHRDWYGILQVLRYTTNIDHIAAQYRRLALLLDPHRNPFALSSHAFSLVHDAWSVLSDSVKKAMYDNDLQLLTSQTPPPQQPQPTPPPPQQRQPPPPPLQPQPQQKKNPRSKNVLAGPGRNTRSESLTQPKELGWTESEGASFWTSCPYCYVMYEYPKVYEDCTLRCQNCRRGFHAVVIRSPPLNGLDESFCTWGFLPLGFSGDSKDINGVGSNWNPFSPLFPCSLKGNTKKKKDWVYYDDEVATAFINISDPSEDDSDGDWRGGKSRASKRARSSRKNFSDVKRKPVRRPRRSSHGGGARTENAGGGVGNENAGGGGTGSVTVNGIAPAVPDGINASAGTSKRAQPGKRGAVGGPRRRGAGNLGKLDLNVEFSNDAEERQEPSHAGMREGNPTGQADDNIEGIGFFEGLDEFLSSLPILNVVGDDKVKDH* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0645 496 MobiDBLite consensus disorder prediction 142 169 - -
Lan17g0645 496 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Lan17g0645 496 MobiDBLite consensus disorder prediction 170 197 - -
Lan17g0645 496 SMART dnaj_3 68 126 IPR001623 -
Lan17g0645 496 MobiDBLite consensus disorder prediction 316 467 - -
Lan17g0645 496 CDD DnaJ 69 123 IPR001623 -
Lan17g0645 496 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 3 496 - -
Lan17g0645 496 SUPERFAMILY Chaperone J-domain 65 134 IPR036869 -
Lan17g0645 496 MobiDBLite consensus disorder prediction 437 451 - -
Lan17g0645 496 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Lan17g0645 496 Pfam DnaJ domain 69 131 IPR001623 -
Lan17g0645 496 MobiDBLite consensus disorder prediction 137 197 - -
Lan17g0645 496 Gene3D DnaJ domain 57 144 IPR036869 -
Lan17g0645 496 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0645 Lan-Chr17 5591649 5593879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0645 9 494 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 39.764 1.53e-101 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0645 - - gmx:100788733 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0645 17 5591649 5593879 Lan18g0638 18 11466189 11467917 LSH
Lan17g0645 17 5591649 5593879 Lan6g0660 6 5881979 5883749 LSH
Lan17g0645 17 5591649 5593879 Lan4g0734 4 9600782 9602594 PCT
Lan17g0645 17 5591649 5593879 Lan16g0067 16 386485 388441 PCT
Lan4g0734 4 9600782 9602594 Lan17g0645 17 5591649 5593879 PCT
Lan16g0067 16 386485 388441 Lan17g0645 17 5591649 5593879 PCT