Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0638 ATGGAAAACGACGACGTTGATATGGTCGGGGAAGACAATAACGAAGTTGAATTGGATGAGATGAAGAAGCGCTTGAAGGAAATGGAAGATGAAACTTCTGCTTTGCGGGAGATGCAAGCCAAGGTCGAAAAGGAGATGGGATCTGTGCAAGATCCTGCTAATGCTGCTGGAAGTCAGATCAATAAAGAGGAAGTAGATTCTCGATCAATCTTTGTAGGCAATGTTGACTATGCTTGCACTCCTGAAGATGTGCAGCAGCATTTCCAATCATGTGGGACTGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGTCAACCCAAGGGTTATGCTTATGTAGAGTTTCTTGAAGTAGAGGCTGTTCAAGAGGCTCTTTCGCTGAACGAATCTGAACTACATGGGCGCCAATTGAAGGTAACTGCTAAGAGGACCAATGTACCGGGGATGAAGCAGTTTCGTCCCCGTCGGGCCAATCCTTACATGGGGTTTCGAGGCAGAGCACCATATGCACCACCCCCTTTTGCCTATGCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGGGTATGAGGTACAGCCCCTACTATTGA 594 0.4663 MENDDVDMVGEDNNEVELDEMKKRLKEMEDETSALREMQAKVEKEMGSVQDPANAAGSQINKEEVDSRSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRANPYMGFRGRAPYAPPPFAYAPYGYGKVPRFRMGMRYSPYY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0638 197 SMART rrm1_1 69 140 IPR000504 GO:0003723
Lan17g0638 197 CDD RRM_II_PABPs 69 140 - -
Lan17g0638 197 Coils Coil 11 45 - -
Lan17g0638 197 SUPERFAMILY RNA-binding domain, RBD 59 166 IPR035979 GO:0003676
Lan17g0638 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Lan17g0638 197 PANTHER - 4 193 - -
Lan17g0638 197 Gene3D - 5 141 IPR012677 -
Lan17g0638 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 193 - -
Lan17g0638 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0638 Lan-Chr17 5529629 5535705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0638 69 196 Eukaryotic Initiation Factors Gene Family AT2G36660 27.132 1.77e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0638 K14396 - mnt:21400190 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0638 17 5529629 5535705 Lan6g0646 6 5809121 5812393 LSH