Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0629 ATGGATCCACTCCCTATTATCAACGATAATACGACACCGTTTCACTTGTCCCAGATCTGGCACTTTCCAACCCCGTCTATAACTGAAGAGGAATTTGCTAAGGCTGCTTCCACCAGCAATGGCGGTGCTGCCAATGCCATGAGTGATGGCGGCAATGGAAAACGGGTGAAGACAATGGGGAACAATAGAAATGAGAGTGGTAAAGGTGAAACAGAAATCAGTTCAGGAAAGCATGCGGAACAACAACAAACTACTCCGCCGGAGCCTCCCCTTAAGCAAGATTACATCCATGTGAGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAAATCTTCAAGATTTAGTCCCTGGATGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCACTTCAGCGCCAAGTAGAGTTCTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAGTGACCCCTGGCATTGAAGTATTTCCTCCCAAAGATTTTGATCAGCAAACATTTGATACAGCCGGCATGCCATTCGCTTCACAAGCTACAAGAGAGTATAGCCGGAGCTCATCACCGGAATGGTTACATATGCAGGTTGGTGGTTTTGAAAGAACAACATAG 675 0.44 MDPLPIINDNTTPFHLSQIWHFPTPSITEEEFAKAASTSNGGAANAMSDGGNGKRVKTMGNNRNESGKGETEISSGKHAEQQQTTPPEPPLKQDYIHVRARRGQATDSHSLAERARREKISERMKNLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVTPGIEVFPPKDFDQQTFDTAGMPFASQATREYSRSSSPEWLHMQVGGFERTT* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0629 224 SMART finulus 110 160 IPR011598 GO:0046983
Lan17g0629 224 CDD bHLH_AtBPE_like 94 179 - -
Lan17g0629 224 MobiDBLite consensus disorder prediction 55 69 - -
Lan17g0629 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 172 IPR036638 GO:0046983
Lan17g0629 224 MobiDBLite consensus disorder prediction 31 46 - -
Lan17g0629 224 Pfam Helix-loop-helix DNA-binding domain 108 155 IPR011598 GO:0046983
Lan17g0629 224 Gene3D - 101 174 IPR036638 GO:0046983
Lan17g0629 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 154 IPR011598 GO:0046983
Lan17g0629 224 PANTHER BNAC05G07950D PROTEIN 40 224 - -
Lan17g0629 224 MobiDBLite consensus disorder prediction 30 91 - -
Lan17g0629 224 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 40 224 IPR024097 GO:0006355
Lan17g0629 224 Coils Coil 151 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0629 Lan-Chr17 5409020 5412159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0629 1 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 53.070 5.65e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g0629 HLH 9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0629 - - lang:109332242 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0629 17 5409020 5412159 Lan18g0654 18 11662986 11671435 LSH
Lan17g0629 17 5409020 5412159 Lan6g0633 6 5573549 5577081 LSH
Lan17g0629 17 5409020 5412159 Lan1g0980 1 20322741 20324155 PCT
Lan1g0980 1 20322741 20324155 Lan17g0629 17 5409020 5412159 PCT