Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0625 ATGTCTCGCACGTGCTCACAGTGTGGCAACAATGGCCACAACTCCCGAACATGCACCGACGCCGCCGCAGCATCCGGCGGCGGAGACTCTCATAAAGAGAACAGCATCATGTTGTTCGGCGTTCGAGTCACTGAAGGGAAGTCCAATCTCTTCAGAAAGAGTGTTAGCATGACCAACCTCTCCCAATATGAACACCAAACCTCTCATGAACCCAACGCCGTTGATGCCGGCTACGTCTCAGACGACGTCGTTCACGCCTCAGGCCACAGCCGCGAGCGCAAACGAGGTGTTCCATGGACGGAAGAAGAGCATAAGTTTTTCTTGTTGGGGTTGTCCAAGGTAGGCAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAAACTCGGACACCAACACAGGTGGCTAGTCATGCTCAGAAGTACTTTCTCCGCCTCCACAACCACGGCCGCCGCCGCCGTAGATCTAGCCTCTTTGATATCACCACCGACACGGTGATGAAACCATCAAGTATAATGGAAGAAGAACAAGTTGTTGAGCAAGAAATGGTGGTGCCACAGCCACCTACCTCCGCCGCATACCCTTTATCACATTACGGCGCCTTCCCTGGCTCGGCTTTTCCCATGGCGGTGGCTCCGGTGGTGTTGCCAGTGACTGCAGGTGAGAGATCAGCCAAGCCTATTAGGCCAACAGCGATTTTGCCTGTGCCACCATCCTCCAAGATGGCTAGTTTGAACTTGAAAGATAAAACTTCTCCTCTTCCTCTCATTGAGCCTCTACCATTGTCACTGAGGCTGCCGCCGCCGCCACCATCCAAGGAGCAGCCACCAACAACTAGTAGCCATTCGTCGTCATCATCATCGACTGCAATAGCTTTTCAGCCCAGGTCCACAGGGAAGTTCAATGGTGGTGGGGATAACATTATTAGTGTTGCTTGA 939 0.525 MSRTCSQCGNNGHNSRTCTDAAAASGGGDSHKENSIMLFGVRVTEGKSNLFRKSVSMTNLSQYEHQTSHEPNAVDAGYVSDDVVHASGHSRERKRGVPWTEEEHKFFLLGLSKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRLHNHGRRRRRSSLFDITTDTVMKPSSIMEEEQVVEQEMVVPQPPTSAAYPLSHYGAFPGSAFPMAVAPVVLPVTAGERSAKPIRPTAILPVPPSSKMASLNLKDKTSPLPLIEPLPLSLRLPPPPPSKEQPPTTSSHSSSSSSTAIAFQPRSTGKFNGGGDNIISVA* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0625 312 MobiDBLite consensus disorder prediction 1 30 - -
Lan17g0625 312 PANTHER TRANSCRIPTION FACTOR KUA1 1 305 - -
Lan17g0625 312 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Lan17g0625 312 SUPERFAMILY Homeodomain-like 93 147 IPR009057 -
Lan17g0625 312 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 305 - -
Lan17g0625 312 SMART sant 95 145 IPR001005 -
Lan17g0625 312 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Lan17g0625 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Lan17g0625 312 MobiDBLite consensus disorder prediction 277 304 - -
Lan17g0625 312 Gene3D - 97 148 - -
Lan17g0625 312 CDD SANT 98 143 IPR001005 -
Lan17g0625 312 MobiDBLite consensus disorder prediction 1 21 - -
Lan17g0625 312 MobiDBLite consensus disorder prediction 260 276 - -
Lan17g0625 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Lan17g0625 312 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Lan17g0625 312 MobiDBLite consensus disorder prediction 252 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0625 Lan-Chr17 5349563 5351287 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan17g0625 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0625 - - mtr:MTR_5g037080 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0625 17 5349563 5351287 Lan6g0628 6 5544920 5546491 LSH