Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0620 ATGGACACTGATCATGGTGTTTCCTTTGATCTCTCTCCCATGGAAGGATCTGAAGATGTTCATGTTTTGGCCGTTGATGATAGCCTCATTGATCGAAAGTTCATTGAGCGCTTGCTCAAAATCTCATCTTGTAAAGTTACCGCTGTTGATAGTGGAACCAGAGCACTACAATTCCTGGGTTTGGATGAGAATAGAAGAACCCATGATTCTGATGATGGCTTTTTTGGTTTGAAGGTGGATCTAATTATCACAGACTATTGCATGCCAGGAATGAGTGGTTATGAGTTGCTCAAGAAAATCAAGGAATCATCCACTTTCAGAGAAATTCCTGTGGTGATTATGTCTTCTGAAAACATTTTACCGCGCATAGATAGATGCTTGGAGGAAGGTGCAGAAGATTTCATTGTGAAGCCAGTGAAGTTATCTGACGTGAAAAGGTTGAAGGGTTACATGACCACTAGAGATGTTAAGGTTGGAAGCCAAGGCCACGGTGGTGATGATGACCGAGGTGGTGTGGGAATCAACAAGAGAAAAGTGTCGGCCACCCTTGACGTGACATCATCACCATCGTCTATTCTATCACCAATATTATCATTGTCATCACTATCTCCTGAACACTCATCATCAGTATCATCATCACCTACCATTATTGATTCGCCGATCAGACGACTTAAAATGACTAGTATCGAATGA 693 0.4199 MDTDHGVSFDLSPMEGSEDVHVLAVDDSLIDRKFIERLLKISSCKVTAVDSGTRALQFLGLDENRRTHDSDDGFFGLKVDLIITDYCMPGMSGYELLKKIKESSTFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTRDVKVGSQGHGGDDDRGGVGINKRKVSATLDVTSSPSSILSPILSLSSLSPEHSSSVSSSPTIIDSPIRRLKMTSIE* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0620 230 CDD REC_typeA_ARR 22 147 - -
Lan17g0620 230 Gene3D - 20 166 - -
Lan17g0620 230 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 228 IPR045279 GO:0009736
Lan17g0620 230 ProSiteProfiles Response regulatory domain profile. 21 152 IPR001789 GO:0000160
Lan17g0620 230 SUPERFAMILY CheY-like 19 146 IPR011006 -
Lan17g0620 230 Pfam Response regulator receiver domain 22 144 IPR001789 GO:0000160
Lan17g0620 230 SMART REC_2 20 151 IPR001789 GO:0000160
Lan17g0620 230 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 8 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0620 Lan-Chr17 5278696 5280081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0620 12 222 Response Regulator Gene Family AT1G59940 58.559 1.55e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan17g0620 Response_reg 3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0620 K14492 - gmx:100779833 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0620 17 5278696 5280081 Lan6g0620 6 5453239 5454793 LSH