Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0617 ATGCCGGGGAATCGGTCTAAGTCGGATAAGGACGGCGGTGCGAAACAGCTCCGGCGAGATCCGTATGAGGTTCTCGGCGTCTCACGTAATTCCACTGATCAAGAAATCAAAAGTGCTTATCGTAAAATGGCGCTTAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCAACTGATATGTTTAAAGAGGTTACCTTTTCTTATAATATCTTATCAGATCCTGAGAAACGCCGTCAGTACGACTCGGCTGGTTTTGAGGCTGTTGAATCAGATAGCCAAGAGTTGGAGTTGGACCTTTCAAGTTTGGGTGCTGTGAATACAATGTTTGCAGCCCTTTTTAGTAAACTTGGTGTTCCAATTAAGACAACTGTATCTGTAACTGTTTTAGAAGAGGCACTCAACGGTCTAGTGACCATTCGTCCACTTCCATTGGGGCATTTTATATCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATTACAGAAGAGGAAGCACAAGCTGGGTTTGTTTGTCGAGTGCACTCATCAGACAAAAGCAAGTTCAAGTTATTATATTTTGATCAGGAAGACAATGGTGGATTGAGTCTTGCGCTCCAGGAAGACAGTGCAAAAACAGGGAAGGTTACCTCTGCTGGAATGTATTTTCTCAAGTTTCCTGTTTATCGGTTAGATCAAACAATGAACTCAATAGCTGCTTCTAAGGATCAAGATACTTCATTTTTCAGAAAGCTGGACGGGTTCAAGCCCTGTGAATTAACAGAATTGAAGGCTGGTACCCATGTATTTGCTATTTATGGTGACAACTTTTTCAGAAGTGCAAACTATACAATAGAAGCTGTGTGTGCTGCACCTTTTAGTGAAGAAAAAGAAAGTTTAAGAAATATAGAATCTCAAATTTTGTCTAAAAGGGCAGAAATGTCAAAGTTTGAGACAGAATACCGAGAGGTTTTGGCACAATTTACAGAGATGACTAGCAAATATTCACACGAAATGCAAGCAATTGATCAGCTGCTGAAACAAAGAAATGAAATACATGCATCATACACTGTCACTCCTTCAAAACTGAGCTCAAGTAAGAGCAGGAACAAAAGTTCTTCCAAGGAGGCAAAAGAAGATGACCAAGCAAGAGATGAGAGTAATGCCAGAGATCATCCAAGGAAGAAGAAATGGTATAACATCAACTTAAGAGTTGATAAGAGAAAGGCTTGCTAA 1227 0.4002 MPGNRSKSDKDGGAKQLRRDPYEVLGVSRNSTDQEIKSAYRKMALKYHPDKNANDPKATDMFKEVTFSYNILSDPEKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSVTVLEEALNGLVTIRPLPLGHFISKRVEKQCAHFYSVTITEEEAQAGFVCRVHSSDKSKFKLLYFDQEDNGGLSLALQEDSAKTGKVTSAGMYFLKFPVYRLDQTMNSIAASKDQDTSFFRKLDGFKPCELTELKAGTHVFAIYGDNFFRSANYTIEAVCAAPFSEEKESLRNIESQILSKRAEMSKFETEYREVLAQFTEMTSKYSHEMQAIDQLLKQRNEIHASYTVTPSKLSSSKSRNKSSSKEAKEDDQARDESNARDHPRKKKWYNINLRVDKRKAC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0617 408 Gene3D DnaJ domain 4 103 IPR036869 -
Lan17g0617 408 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 408 - -
Lan17g0617 408 SUPERFAMILY Chaperone J-domain 19 89 IPR036869 -
Lan17g0617 408 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Lan17g0617 408 MobiDBLite consensus disorder prediction 1 28 - -
Lan17g0617 408 MobiDBLite consensus disorder prediction 366 408 - -
Lan17g0617 408 CDD DnaJ 20 74 IPR001623 -
Lan17g0617 408 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Lan17g0617 408 PANTHER CHAPERONE PROTEIN DNAJ 16 5 408 - -
Lan17g0617 408 Coils Coil 297 317 - -
Lan17g0617 408 Pfam DnaJ domain 20 82 IPR001623 -
Lan17g0617 408 PRINTS DnaJ domain signature 22 40 IPR001623 -
Lan17g0617 408 PRINTS DnaJ domain signature 40 55 IPR001623 -
Lan17g0617 408 PRINTS DnaJ domain signature 57 77 IPR001623 -
Lan17g0617 408 PRINTS DnaJ domain signature 77 96 IPR001623 -
Lan17g0617 408 SMART dnaj_3 19 77 IPR001623 -
Lan17g0617 408 MobiDBLite consensus disorder prediction 354 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0617 Lan-Chr17 5208617 5214399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0617 18 83 C2H2 Transcription Factor Family AT1G74250 45.070 2.92e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0617 - - gmx:100800929 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0617 17 5208617 5214399 Lan6g0616 6 5390542 5395247 LSH