Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0613 ATGTCTTCATACAGCTCCATCTGCTTCTCCGACTCTAACGTTCTCTGCAGCGAGGACACTATCGGAACCCTCTCTGGTAAGTCGACGGAATTATACTCCTCTGACATCGATTCCTCGCCGCCGACGTTGAGGTCGTCGGAAGAGGAGGAGTCCATAGCCGGATTCATCGAAGACGAGCACAATTTTGTTACCAGATTCGATTACCTTTCGAGGTTCCGGTCTCGCTCGCTTGACGATTCCGCCAGAAAAGAATCAGTTGCATGGATTCTCAAGGTGCAGGCTTATTACGGTTTTCAACCGCTGACGGCGTATCTTTCCGTCAATTATATGGATCGGTTCTTGAACTCTCGGCACTTGCCGACAAATGGTTGGCCACTACAACTTGTGTCTGTTGCATGCTTGTCTTTAGCGGCAAAGATGGAGGAACCTGTGGTTCCCTCTCTCTTGGACCTTCAGGTAGAAAGTCCCAAATACATATTTGAGCCAACAACAATTCAAAGGATGGAGCTACTTGTTCTGGGCGTTTTGGATTGGAGGCTAAGATCTATAACTCCATTTAGCTTCCTCGGTTTCTTCGCATGCAAGTTAGATTCAACTGGAACTTTTACAGGGTCCCTTATTTCACGGGCTACACAAATAATCTTATCTAATGTTCAAGAGGCTAGCTTTCTTGCATACTGGCCATCATGCATTGCTGCCTCGGCAATACTATGTGCAGCAAACGAAATTCCTAATTGGTCTCTTGTTAGGCCTGAACATGCCGAGTCATGGTGCGAGGGGTTAAGAAAAGTAAGCAATGAGAAAATTATTGAGTGCTACCAATTAATGCAAGAAGTTGTTATTGACAATAAGAAGAGGAAGCTCCCTAAAGTGTTGCCACAGCTGCGTGTGACAACCGAGACCCCAATGAGCTCAAGTGTTTCGTCATCCTCATCATCATTTTCTTCTTCTACTTCTTTCTCTTTGTCTTACAAATGGAGGAGAATAAATAGTAACCGTTTTTGTGTTGATGCTGAGAAAGAAAAGTTCCGAGAGAAAGAACAATAA 1047 0.447 MSSYSSICFSDSNVLCSEDTIGTLSGKSTELYSSDIDSSPPTLRSSEEEESIAGFIEDEHNFVTRFDYLSRFRSRSLDDSARKESVAWILKVQAYYGFQPLTAYLSVNYMDRFLNSRHLPTNGWPLQLVSVACLSLAAKMEEPVVPSLLDLQVESPKYIFEPTTIQRMELLVLGVLDWRLRSITPFSFLGFFACKLDSTGTFTGSLISRATQIILSNVQEASFLAYWPSCIAASAILCAANEIPNWSLVRPEHAESWCEGLRKVSNEKIIECYQLMQEVVIDNKKRKLPKVLPQLRVTTETPMSSSVSSSSSSFSSSTSFSLSYKWRRINSNRFCVDAEKEKFREKEQ* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0613 348 CDD CYCLIN 82 173 IPR013763 -
Lan17g0613 348 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 331 - -
Lan17g0613 348 SMART Cyclin_C_2 183 313 IPR004367 -
Lan17g0613 348 Pfam Cyclin, C-terminal domain 183 296 IPR004367 -
Lan17g0613 348 Gene3D - 65 181 - -
Lan17g0613 348 SMART cyclin_7 87 174 IPR013763 -
Lan17g0613 348 PANTHER CYCLINS 1 331 IPR039361 -
Lan17g0613 348 SUPERFAMILY Cyclin-like 41 180 IPR036915 -
Lan17g0613 348 SUPERFAMILY Cyclin-like 165 291 IPR036915 -
Lan17g0613 348 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Lan17g0613 348 Gene3D - 56 274 - -
Lan17g0613 348 Pfam Cyclin, N-terminal domain 54 180 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0613 Lan-Chr17 5168071 5172920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0613 4 299 Core Cell Cycle Gene Families AT1G70210 61.130 1.97e-122 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0613 K18810 - gmx:100775224 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0613 17 5168071 5172920 Lan18g0669 18 11858006 11862191 LSH
Lan17g0613 17 5168071 5172920 Lan6g0614 6 5378233 5381867 LSH
Lan17g0613 17 5168071 5172920 Lan17g1095 17 17878665 17882720 PCT
Lan17g1095 17 17878665 17882720 Lan17g0613 17 5168071 5172920 PCT