Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0576 ATGCCTCTTCTACTCGCAGCTACACAAACACAACCTTCGTTAATTCCTTCCATCACTTCTAACCATCACCACAACATCATAACTCAACCTCTTATTATCAGAGCCTATCAGAAAAATCGTTATCCTTTCACTACTCCCACTTTCTCTTCACGTTCACGCCACATTCTGTTAACTCATCATCCTCTAAAATCAGCTTCAATCAATGGGGTCTCCGTCCAGAACAATCCAGAAGCTTCTAGTGAAGTCAATGCTATTGACTTTTTTCACAGACTACGGAAATGGGTTCAGTTCCTTCCTTTGATTTTACCCGGTGGAAAATGGTGGAACCTCTCAGACGAAGACGTTCAGGCTCAAGTTCTGGCTAAACCCATTACTGTGTGGCGCGCCTTGGCCAAAATGTGGCACCTTGTTTCTCGTGACCGATGGGTCATTTTTGCTGCTTTCACTGCTCTCATTTTTGCTGCGGTTTCGGAAATTTCGATACCCCATTTCATGACGGCATCAATATTCTCAGCACAGAATGCTGACATCACAGTTTTCCACAGGAACGTGCGTTTGTTAGTTCTGATGTGTATAATTTCGGGAATATGCAGCGGGATACGGGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAAAGAATGAGAGAAACATTGTACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACACTGAAACAGTGGGTGATTTGACAAGTAGGCTTGGGGCAGATTGTCAACAAGTGTCGCGGGTTATTGGAAATGATATTAACTTGATACTGCGCAATTTTCTTCAGGGGGCAGGTTCATTAATCTATTTGTTGACTTTGTCTTGGGCACTTGGCTTATCTACATTGTTGATATGCTCCATACTAATTGCAGTCATGCTACATTATGGAAGGTACCAGAAAAAGTCAGCAAGGTTGGTCCAAGAAGTCACTGCTTCTGCCAATGAAGTAGCACAGGAGACATTCTCTCTTATTAGAACTGTTCATGTTTATGGAACAGAAAAGGAAGAACTTGGAAGATACAAATCATGGCTGGAGAAATTAGCTGACATAAGCTTGCGACAAACTGCTGCTTATGGATTTTGGAATTTAAGCTTCAACACTCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAGTGTCTATTCTTGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTAATTTTTTCAACCTGGTGGGTGGGAGACAGTGTCTCCAATCTGATGCAATCTGTTGGGGCTAGTGAAAAAGTATTCCATTTAATGGATCTCGCATCTAGCAGCCAGTTTATAGCTAGAGGAGTGAAGTTGCAGAGCTTAACAGGGCAAATTGAGTTTCTAAACATATCTTTTCACTATCCTTCAAGGCCAACGGTACCGGTAGTGCAACTTGTAAACTTTGTTGTCCATCCCAGTGAGGTGGTTGCCATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACACTGGTAAACCTTTTGCTCCGTCTGTATGAGCCTACAAATGGTCAGATTTTGATAGATGGAATCCCTCTTAAAAACTTGGATGTCAAATGGTGGAGAGAGAGAATCGGATATGTGGGACAGGAACCCAAGCTGTTCCGAATGGATATTAGTTCAAACATCAAATATGGGTGTACTCGAGATGTAAAGCAGGAGGATATTGAATTGGCTGCAAAGCAAGCTTATGCCCATGATTTCATCTCTGCACTTCCCAATGGTTATGAAACGCTCGTTGATGATGATTTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTCTTCTTAGGGATCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGGTGTTCTTCGATCTGTGAGAAGTGATTCCCATTCGAGGAGAAGTGTTATAGTCATTGCACACAGGCTTTCTACCATACAAACAGCTGACAGGATTGTGGTAATGGATGGTGGTCAAGTTGTTGAGAATGGAAGCCACAGGGAACTTCTGTTGAAAGATGGTCTATATGCACGGTTGACCAGAAAACAGGCTGATGCCATGGCATGA 2118 0.4221 MPLLLAATQTQPSLIPSITSNHHHNIITQPLIIRAYQKNRYPFTTPTFSSRSRHILLTHHPLKSASINGVSVQNNPEASSEVNAIDFFHRLRKWVQFLPLILPGGKWWNLSDEDVQAQVLAKPITVWRALAKMWHLVSRDRWVIFAAFTALIFAAVSEISIPHFMTASIFSAQNADITVFHRNVRLLVLMCIISGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDTETVGDLTSRLGADCQQVSRVIGNDINLILRNFLQGAGSLIYLLTLSWALGLSTLLICSILIAVMLHYGRYQKKSARLVQEVTASANEVAQETFSLIRTVHVYGTEKEELGRYKSWLEKLADISLRQTAAYGFWNLSFNTLYHSTQVIAVLFGGVSILAGHITAEKLTKFILYSEWLIFSTWWVGDSVSNLMQSVGASEKVFHLMDLASSSQFIARGVKLQSLTGQIEFLNISFHYPSRPTVPVVQLVNFVVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGIPLKNLDVKWWRERIGYVGQEPKLFRMDISSNIKYGCTRDVKQEDIELAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSHSRRSVIVIAHRLSTIQTADRIVVMDGGQVVENGSHRELLLKDGLYARLTRKQADAMA* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0576 705 SMART AAA_5 487 676 IPR003593 -
Lan17g0576 705 Gene3D ABC transporter type 1, transmembrane domain 127 445 IPR036640 GO:0005524|GO:0016021
Lan17g0576 705 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 83 704 - -
Lan17g0576 705 Gene3D - 450 704 IPR027417 -
Lan17g0576 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 700 IPR027417 -
Lan17g0576 705 SUPERFAMILY ABC transporter transmembrane region 132 439 IPR036640 GO:0005524|GO:0016021
Lan17g0576 705 Pfam ABC transporter transmembrane region 145 412 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan17g0576 705 CDD ABC_6TM_TAP 147 434 - -
Lan17g0576 705 ProSitePatterns ABC transporters family signature. 598 612 IPR017871 GO:0005524
Lan17g0576 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 460 699 IPR003439 GO:0005524
Lan17g0576 705 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 145 426 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan17g0576 705 PANTHER ABC TRANSPORTER B FAMILY 83 704 - -
Lan17g0576 705 Pfam ABC transporter 481 626 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0576 Lan-Chr17 4792307 4801387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0576 215 703 Calmodulin-binding Proteins AT2G36910 35.800 1.82e-71 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0576 - - gmx:100775951 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0576 17 4792307 4801387 Lan18g0713 18 12391852 12400895 LSH