Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0568 ATGGCTCTTCCTGGTACTATGCAGCTGTCCCATGGACTGGGACTTTGCATGAACCTGCGCTGCAATAAACATCCGGGGGCAATAGGAAGAGGAAATATATATTTATTGAGTGCAGGTCCTTCATATCCTGTTTCGTTTATGAAACAGGATTGCCGGGGTTTTCAACACTTCCGTCAAATAGGCAAGCCAACACATACATTATCTTATAAATCTCGCGCTTTTAAGTGCCATTCTTTTCTAGTGCCAGGCCAACCAAGTGAGATACCTGTTGTTAAGGTGGCTGCTACCGTTTTGGCAAGGTCCTATAATGTGCTACAAAGTAGTCCTGTCATAGTAAAGTTGATTCCTGCAGTTGGTATTATCATTTTTGCACTGTGGGGTTTAGGCCCATTTATGTGTCAGACAAGGAAACTGTTTTTTCAGAGGAGTGATAATAGTTGGAAGAAGAGTACCACACATTATATAGTAACTTCTTACATTCGACCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCAGCAGTTCTACCTACAGAAACTGGGCAGGTTGTTAAGGAAAGGCTTTTGCACTTCGTAAGATCATTGTCAACTGTAGTGGCCTTCGCCTATTGTTTATCAAGTGTGATTCAACAAGCACAGAAATTCTTAATGGATAACACTGATGCAAGTGAGACAAGAAATATGGGATTCCAATTTGCAGGCAAAGCTGTTTATTCGGCAGTATGGATTGCTGCCTTTTCACTGTTCATGGAATTGTTGGGCTTCTCTACCCAGAAATGGGTGACTGCAGGAGGTCTTGGGACAGTTCTGCTGACTCTTGCTGGTCGTGAGATATTTACAAATTTCCTTTCGAGTGCGATGATTCATGCAACTCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATCGAAGGATATGAGGTTTCCGGTACTGTTGAGCATGTTGGCTGGTGGTCACCAACAATTATAAGAGGTGAAGACCGTGAAGCTATCCATATTCCAAACCACAAATTTACAGTCAATGTTGTACGAAACCTCAGCCAGAAAACGCATTGGCGGATCAAAACCCACTTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATAGTTGCTGACATGCGGAAAGTATTATCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCATAGGAGAGTATTTTTGGAAAACATAAATCCTGAAAATCAGGCTCTTTTGATTCTGGTGTCTTGTTTTGTCAAGACCTCACATTTTGAAGAATATTTGTGTGTTAAGGAGGCTATACTATTGGATCTTCTTAGAGTTATTGGACATCACCGGGCCCGACTTGCAACACCAATCCGTACCTTGCAGAAAACATACCGTGGTGCTGCTGACTTGGAGAACATACCATTTGCAGATTCCACTTTCAGTGGTCCTGGAACAGTATCTAACCGGCCATTATTAATGATTGAACCCGCTTACAAGATCAGTACAGATGATAAGATGAAAAGTCGATCAGCACGACCAGCTGGTGATCAAGATAACAAAACAACTGTCCGAACCAGACCTGACAGCAAGACAGACACCAAGGTTAGTGACTCCGAGGTGGATGCCAAAGATATGAAGTGA 1632 0.421 MALPGTMQLSHGLGLCMNLRCNKHPGAIGRGNIYLLSAGPSYPVSFMKQDCRGFQHFRQIGKPTHTLSYKSRAFKCHSFLVPGQPSEIPVVKVAATVLARSYNVLQSSPVIVKLIPAVGIIIFALWGLGPFMCQTRKLFFQRSDNSWKKSTTHYIVTSYIRPLLLWTGAILICRALEPAVLPTETGQVVKERLLHFVRSLSTVVAFAYCLSSVIQQAQKFLMDNTDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLSKNPQVEQQRLHRRVFLENINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPIRTLQKTYRGAADLENIPFADSTFSGPGTVSNRPLLMIEPAYKISTDDKMKSRSARPAGDQDNKTTVRTRPDSKTDTKVSDSEVDAKDMK* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0568 543 MobiDBLite consensus disorder prediction 500 543 - -
Lan17g0568 543 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
Lan17g0568 543 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 539 - -
Lan17g0568 543 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 539 IPR045042 -
Lan17g0568 543 Gene3D - 299 354 IPR023408 -
Lan17g0568 543 Gene3D - 196 297 - -
Lan17g0568 543 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0568 Lan-Chr17 4674673 4694021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0568 9 537 Mechanosensitive Ion Channel Family AT5G10490 65.056 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0568 K22047 - gmx:100796304 903.279