Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0565 ATGGCTCGTGCTACTAACTCTAACTGGTTATCGTTTTCATTATCCCCCATGGAAATGCTCAGGTCCTCTGAACCTCAGTTCATTCAATACGATGCTGCTTCAGCTCCGTCTCAATACTTTCTTGATAACTATTATGCCAATGGGTGGGGGAACTCTAAGTCTCAGATGCTATACGGTGTTCAAATGGACCAAAACGACAGCAACAAGGAACAAGCACCGCCACAGGCAGTGCCGAAGCTAGAGGACTTTTTCGGAGATTCTTCCTCAATGATGCGCTACTCCGATAGCCAAACGGAGACTCCAGATTCCTCCCTTACCCACTCCTATGAGCACGGTGGCTCCTCCACTTACTTTAGTGGTGGCGACCACCAAGATCTGAAAGCCATTGCTGGCTTCCAAGCTTTCGCCACCAACTCGGGCTCCGAGGTGGATGACTCTGGTTCCATCGGAAAATCTCAACCCACTTGTAATGAGTTTGGAACTCATTCCATTGAATCCCCAGCAAGTGCTTTGGCCTTTTCTGGCCGATGCGGCAATGCCACGGATACTTTTTCCCTTGGCATTCCGGAGAGCTCAGAAAAGGCCGTAGCTGTGGTCACTTCAGTTACCCCTAAGAAGATCGCTGATACTTTTGGTCAGCGAACTTCAATCTATAGAGGAGTCACTAGACACAGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAAGCCAGGAAAGGGCGTCAAGTGTATTTAGGTGGATATGACAAGGAAGAGAAGGCGGCGAGAGCTTATGATTTGGCAGCTCTTAAGTATTGGGGTCCAGCCGCAACCACCAACTTCCCGGTTTCCACTTATTCAAAAGAAGTGGAGGAGATGAAACATGTAACAAAGCAAGAATTTATTGCATCATTACGAAGGAAAAGTAGCGGTTTTTCTAGGGGAGCTTCCATGTACAGGGGTGTTACAAGGCATCATCAACAGGGTCGATGGCAGGCAAGAATCGGCCGCGTTGCTGGAAACAAAGATCTATACTTGGGAACATTCGCAACTGAAGAGGAAGCAGCAGAGGCATATGATATTGCAGCTATAAAATTTAGAGGTTCAAATGCTGTAACCAATTTTGAGATGAACAGATATGATGTGGAAGCTATAATGAATAGTTCACTTCCCGTTGGCGGGGCAGCAAAACGCTTGAAGCTTTCCCTAGAGTCGGAGCAGAAACAACAATCTCTGGGCAATTCTCAACAGCAGCAGCAACATCCTCAGTGTGGAAACATGAATAGCAGCATCAATTTCTCAGCCATTCATCAGCCAACTCTTTCTATCCCTCGTGGAATTCCGTACGATTCGTCAACAGCGTATTATCACCACAACCTCTTTCACCAGTATCAGCATCCTACCAATGGTGGCGCACCCGAATCTGGTGTAACTTCGATCAATACATCTGGGTTGAATACAGTGCCAGCAACAGCGGCACCTGAGTTCTTTACATGGACTCATCAGTCATATTGA 1518 0.4704 MARATNSNWLSFSLSPMEMLRSSEPQFIQYDAASAPSQYFLDNYYANGWGNSKSQMLYGVQMDQNDSNKEQAPPQAVPKLEDFFGDSSSMMRYSDSQTETPDSSLTHSYEHGGSSTYFSGGDHQDLKAIAGFQAFATNSGSEVDDSGSIGKSQPTCNEFGTHSIESPASALAFSGRCGNATDTFSLGIPESSEKAVAVVTSVTPKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPAATTNFPVSTYSKEVEEMKHVTKQEFIASLRRKSSGFSRGASMYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGSNAVTNFEMNRYDVEAIMNSSLPVGGAAKRLKLSLESEQKQQSLGNSQQQQQHPQCGNMNSSINFSAIHQPTLSIPRGIPYDSSTAYYHHNLFHQYQHPTNGGAPESGVTSINTSGLNTVPATAAPEFFTWTHQSY* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0565 505 MobiDBLite consensus disorder prediction 406 427 - -
Lan17g0565 505 Pfam AP2 domain 217 275 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 Pfam AP2 domain 320 369 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 SUPERFAMILY DNA-binding domain 216 285 IPR016177 GO:0003677
Lan17g0565 505 MobiDBLite consensus disorder prediction 89 111 - -
Lan17g0565 505 CDD AP2 318 377 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 7 501 - -
Lan17g0565 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 501 - -
Lan17g0565 505 SUPERFAMILY DNA-binding domain 318 378 IPR016177 GO:0003677
Lan17g0565 505 SMART rav1_2 217 289 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 SMART rav1_2 319 383 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 ProSiteProfiles AP2/ERF domain profile. 217 283 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 MobiDBLite consensus disorder prediction 88 111 - -
Lan17g0565 505 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 PRINTS Ethylene responsive element binding protein signature 359 379 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 CDD AP2 216 285 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 ProSiteProfiles AP2/ERF domain profile. 319 377 IPR001471 GO:0003700|GO:0006355
Lan17g0565 505 Gene3D AP2/ERF domain 319 379 IPR036955 GO:0003700|GO:0006355
Lan17g0565 505 Gene3D AP2/ERF domain 217 285 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0565 Lan-Chr17 4626378 4631589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0565 77 505 AP2-EREBP Transcription Factor Family AT5G10510 57.256 1.53e-160 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lan17g0565 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0565 K09285 - gmx:100777168 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0565 17 4626378 4631589 Lan18g0734 18 12699501 12704535 LSH