Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0554 ATGAACTTTTACGTAATCATCCTAAAATCCGTATCTGGGCAATCTGCAGTCACCGTGAATTCACAGCATCCTAAGCAGGTGGTAATTGGCAATGGCATCGTTACTGTCACGTTTGCAAACCCCGAAGGCTATATCCTAGGAATATCATATGCTGGAATTGATGCGTTTAATCCTAATCATAAAAGAACCGATAGAGGGTACTTTGATGTTGTTTGGAATGAACCGGGAAAACCAGGTATCTTTCAGAGAATCGAAGGGACAAAGTTTTCAATCATAGAACAGGATGAGAACAAGGTGGAGGTTTCATTTTCAAGAACATGGACAACTTCTTTGAGAGGCTCAAATGTCCCCATGAGCATAGATAAAAGGTACATATTGCGAAAAGGCGATTCAGGATTTTATTCATATGTAATATTTGATCGTCCAGAAGGACTACCTGCCGTAGAAGTTTATCAAATTAGATTTGTTTACAAGCTTCATGAAAGGTTCAACTACATGGCAATATCAGATACTAGGCAAAGGAACATGCCTTCAGAAAGAGAAAGAGAAATGGGTACAAAATTGGATTATCCTGAAGCTGTTCGTATAACCAATGCATCTAACCCAGAATTTATTGGAGAGGTGGACGACAAATACCAATATTCGTGTGAGAACCAAGACAACATTCTTCAAGGTTGGATTACCCACGATTCTAAACAATCAGTGGGTATTTGGATGATAACACCAAGTAATGAGTTCCGCAATGGTGGACCTGTTCATCAAGATCTCACTTCCCATGTTGGCCCAATTTTACTCAACATGTTTGTGAGCACACACTATGCTGGAAAGAGCCTAGGCATGACATTTCAACAAGGAGAAACTCATAAAAAGGTTTATGGACCATTTTTTACTTACCTTAACTCTGCTGAAAGTAATGCTAAATACAAAACTCTGTGGTCAGATGCTGTACAACAGAAAACCAAAGAAGTCCAAAGTTGGCCTTATGATTTCACTAAATCAAAGGATTTCTTTCCAGCCAAACAAAGGGGTAGAGTAGAAGGAGTTTTAAATATCCAAGATAGATTCATAACCGAAGGTAGGGCTCAACCTGCTAAGAATGCTTACGTTGGTCTAGCTGTTCCTGGAAATGCAGGATCATGGCAACAAGAAAGCAAGGGTTATCAATTCTGGACTCGAACTGATGGGAATGGACACTTTGAAATAAAAAATATTGTACCTGGAGAATATAATTTGTATGCATGGGTTCCTGGCTTTATTGGTGATTACAAATATGAGAAGACAATTACCATTACACCAGGAAGAGACCTCAACTTGGATTCGCTCCTATATAGTCCTCCAAGAAATGGTCCTACCCTTTGGGAAATTGGCACTCCAGATCGTTCAGCTGCAGAATTCTATGTACCAGATCCTTACCCAAATCTCTTGAACAACTTATACAAGAATGATACTAAAGACAAGTTTAGGGAATACGGGTTGTGGGCACGTTACTCTGAAATATATCCCCAAAATGATCTTGTCTTCACTGTTGGTGTTAGTGACTATAAAAAGGATTGGTTTTATGCTCATGTTACCAGGAAAGTAGAAAACACATACCAGCCAACCATATGGCAGATTGTATTTCAACTTCAAGATAGTGTATCGAACGGAGATTACACACTACACCTGGCTCTAGCATCCGCTAATGGTGCTGAAGTGCAGGTTCGGCTCAACGATCCAAATGCTGGTTCGCCGATCTTCACAACAGGGCTAATTGGCGGCGACAATGCCATAGCAAGGCACGGCATACATGGCTTGTACTGGCTGTTTAGCATACCTATTCCTAGCAGTCATTTGGTAAAGGGAAATAACACCATCTATCTGAGGCAAGCAACAGGTAGAAGCCCTTTCGCTGGAGTTATGTATGATTATATCCGCCTAGAAGGTCCTGCAACTCAGGGTGTTTGA 1944 0.4064 MNFYVIILKSVSGQSAVTVNSQHPKQVVIGNGIVTVTFANPEGYILGISYAGIDAFNPNHKRTDRGYFDVVWNEPGKPGIFQRIEGTKFSIIEQDENKVEVSFSRTWTTSLRGSNVPMSIDKRYILRKGDSGFYSYVIFDRPEGLPAVEVYQIRFVYKLHERFNYMAISDTRQRNMPSEREREMGTKLDYPEAVRITNASNPEFIGEVDDKYQYSCENQDNILQGWITHDSKQSVGIWMITPSNEFRNGGPVHQDLTSHVGPILLNMFVSTHYAGKSLGMTFQQGETHKKVYGPFFTYLNSAESNAKYKTLWSDAVQQKTKEVQSWPYDFTKSKDFFPAKQRGRVEGVLNIQDRFITEGRAQPAKNAYVGLAVPGNAGSWQQESKGYQFWTRTDGNGHFEIKNIVPGEYNLYAWVPGFIGDYKYEKTITITPGRDLNLDSLLYSPPRNGPTLWEIGTPDRSAAEFYVPDPYPNLLNNLYKNDTKDKFREYGLWARYSEIYPQNDLVFTVGVSDYKKDWFYAHVTRKVENTYQPTIWQIVFQLQDSVSNGDYTLHLALASANGAEVQVRLNDPNAGSPIFTTGLIGGDNAIARHGIHGLYWLFSIPIPSSHLVKGNNTIYLRQATGRSPFAGVMYDYIRLEGPATQGV* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0554 647 CDD RGL4_N 26 302 - -
Lan17g0554 647 CDD RGL4_M 341 441 IPR029413 -
Lan17g0554 647 Gene3D - 449 640 - -
Lan17g0554 647 CDD RGL4_C 453 640 - -
Lan17g0554 647 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 18 644 - -
Lan17g0554 647 SUPERFAMILY Starch-binding domain-like 361 441 IPR013784 GO:0030246
Lan17g0554 647 Pfam Polysaccharide lyase family 4, domain III 451 639 IPR029411 -
Lan17g0554 647 SUPERFAMILY Galactose mutarotase-like 22 302 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lan17g0554 647 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 18 644 - -
Lan17g0554 647 Pfam Rhamnogalacturonate lyase family 13 208 IPR010325 -
Lan17g0554 647 Gene3D - 337 440 - -
Lan17g0554 647 SUPERFAMILY Galactose-binding domain-like 448 640 IPR008979 -
Lan17g0554 647 Gene3D - 16 319 IPR014718 GO:0030246
Lan17g0554 647 Pfam Polysaccharide lyase family 4, domain II 365 436 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0554 Lan-Chr17 4493165 4499666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0554 17 643 Polysaccharide Lyase AT4G37950 53.228 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0554 K18195 - gmx:100781089 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0554 17 4493165 4499666 Lan6g0526 6 4573298 4579555 LSH
Lan17g0554 17 4493165 4499666 Lan17g0733 17 6807460 6810014 PCT
Lan17g0733 17 6807460 6810014 Lan17g0554 17 4493165 4499666 PCT