Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0553 ATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGATAATTCTACAAGCAGACAAGTGACTTTCTCAAAGAGGAGAAAGGGTCTGTTCAAGAAAGCAAAGGAGCTAGCAATCCTTTGTGATGCAGAAGTTGGACTTATCATTTTCTCCAACACTGGGAGGCTTTATGAATATGCAAGCACAAGCATGAAATCAGTGGTCGAGAGGTATAACACGTGCAAGGAGGAACACCAACAACTGATAAATCCAGAATCGGAAGTCAAGAGGGAGGCAGAAATCTTAAGGCAGCAACTACAGAATCTACAAGAAAACCATCGGCAATTGATGGGAGAACAGCTTTACGGTTTGAGTGTAAGAAACCTACAAGATCTAGAGAATCAACTGGAAATGAGTCTCCAGGGTGTCCGCATGAAAAAGGAACAAATTCTAACAGAAGAAATTCAAGAGCTGAACCGAAAGGGAAATCTTATCCATCAGGAAAATGTGGAACTTTATAAGAAAGTAAATCTCATTCAACAAGACAACATGCAATTATGCAAAAAGGTCTATGGCATAACGGATATGGCTGTAAGCAAAAATATTTTTGTTCCGCTTCCATTCGATGTTCACGCAGGACAGGATCCACAAGCATTGATCCAACTTCAGTTATGTCAGCCTGATCAAGAAACATGTGAAACATCAGGCAGTGGCAGTGCAACAAAATGA 702 0.4088 MGRGKIVIRRIDNSTSRQVTFSKRRKGLFKKAKELAILCDAEVGLIIFSNTGRLYEYASTSMKSVVERYNTCKEEHQQLINPESEVKREAEILRQQLQNLQENHRQLMGEQLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTEEIQELNRKGNLIHQENVELYKKVNLIQQDNMQLCKKVYGITDMAVSKNIFVPLPFDVHAGQDPQALIQLQLCQPDQETCETSGSGSATK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0553 233 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan17g0553 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan17g0553 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan17g0553 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lan17g0553 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan17g0553 233 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Lan17g0553 233 Coils Coil 83 110 - -
Lan17g0553 233 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 228 - -
Lan17g0553 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan17g0553 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan17g0553 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan17g0553 233 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Lan17g0553 233 Coils Coil 120 140 - -
Lan17g0553 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Lan17g0553 233 Pfam K-box region 83 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan17g0553 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0553 Lan-Chr17 4457583 4465969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0553 1 229 MADS-box Gene Family AT2G22630 60.086 8.12e-93 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan17g0553 K-box 3.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0553 K09264 - gmx:100795778 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0553 17 4457583 4465969 Lan18g0744 18 12843875 12851876 LSH