Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0545 ATGGAGCTTTCACAACTTGGTTTTCTAGAGGAACTACTAGCTCCAAGAAGAGAAACATGGAATGCTTTATCCAGTGGAATGAGTGAACTTTTCCCTAGTGGTTGGAACATTGACTCTTTTGATGAGAGTCCTTATTTATCTACATTGAGTCCCTCATTTGCTGCATTCTCAACACCAATAGACCATAGATTTGAATGCCCTTATGGAAATGAAGCATTGTATCCATTTCTTGATGGATTCACAATGCCAGAGCTTGGTTCATCATACACCAGGAATCATGACCCAGCACCACTTTTACCACAAGAGGGTAACCCATCAATGCATGACGAAGAACTTGGCTTTCTTGGGAATGGTAACCTGGGTTTGGAAGAAAGAAATGATGGCTGCAAAGTTGAGGAACAAGCTTCAGAGATTCCAGTTTTCAACATGGGCATTTGTGGAGAGAAAAAAACAAAATACAAGAAAGTTGAAGGGCAACCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAACGTCTCAATGATAGGCTTTCCATGCTAAGGTCAATAGTACCTAAGATTAGCAAGATGGACAGGACTTCCATTCTTGGAGATGCCATTGATTACATGAAAGATCTTCTAGAAAGGATAGGAAAGTTGCAAGAAGAAGAAATGGAGGAGGGAAAAATTCAGATAAACCACTTGGACATTTCTAAGGAGCAAAAGCCAAATGAAGGAATGTTTGATGTTGAGAGGAGAGAAAAGGACACCAAAATAAGCATATGTTGTGCCACAAAGCCTGGATTATTACTGTCAACAGTGAACACCTTAGAAGCACTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCACTGCAAGCATCTTGCTCAGAGGCAGCTGAACAAAGGAACTGTATTAGCCCTGAAGACATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATTTCTATAG 978 0.4059 MELSQLGFLEELLAPRRETWNALSSGMSELFPSGWNIDSFDESPYLSTLSPSFAAFSTPIDHRFECPYGNEALYPFLDGFTMPELGSSYTRNHDPAPLLPQEGNPSMHDEELGFLGNGNLGLEERNDGCKVEEQASEIPVFNMGICGEKKTKYKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKDLLERIGKLQEEEMEEGKIQINHLDISKEQKPNEGMFDVERREKDTKISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEAAEQRNCISPEDIKQALFRNAGYGGRFL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0545 325 PANTHER - 2 324 - -
Lan17g0545 325 CDD ACT_UUR-ACR-like 251 292 - -
Lan17g0545 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 219 IPR036638 GO:0046983
Lan17g0545 325 Gene3D - 149 223 IPR036638 GO:0046983
Lan17g0545 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 324 - -
Lan17g0545 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Lan17g0545 325 SMART finulus 164 213 IPR011598 GO:0046983
Lan17g0545 325 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0545 Lan-Chr17 4363930 4365602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0545 149 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.416 1.64e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g0545 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0545 - - gmx:100806571 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0545 17 4363930 4365602 Lan18g0748 18 12905905 12907989 LSH
Lan17g0545 17 4363930 4365602 Lan6g0515 6 4364857 4366470 LSH