Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0544 ATGTCTCCACCGCTGCTGGTTACGGAGGAGGAAGGGCAGAGCAAAGTTTCGTCGTCGATTGTAGCGTCTGCATCTTCGCAATCCTTAGACTGTTTCTCCCAAAATGGGATTGAATTGAAGGAAAGAAATTACATGGGATTGTCTGATTGCTCATCAGTGGATAGTTCTAGTCCTAGTGTCCCAAGCTTCTCTCATGAGAAAAAGGAGAACCTGAATTTGAAGGCCACGGAGTTGAGGCTGGGTCTTCCTGGATCACAATCACCCGAAAGGAACCCAGATCTTTACTCTTTAAGCTCGGCAAAACTTGATGAAAAGCCACTGTTCCCTTTGCTTCCTATGAAAGATGGAATCAGCTTGGCATCCCAGAAGGCTGTGGTTTCAGGTAACAAAAGAGGTTTTGCCGATGCCATGGATGGGTTCCCTCAGGGGAAGCTTATTGGGAATACAGGGATGGGTGTAATGCTGTCACCTACACGTACTGGAGCTCAGCCCACTGCAGTGAGAGAAATTCAAAGCAAAGTGTTACAAGAACAACCTTGTGCAGCTAATGGTGCTTCTATCAGTGGTGGTGCTCCGGCTTCTAAGGCACAGGTTGTTGGCTGGCCTCCTATCAGATCATTTAGGAAAAACTCGATGGCCACAACTTCAAAGAACAACGATGAAGTTGATGGAAAACCAGGTCCTGCCGCTCTCTTTGTGAAGGTCAGCATGGATGGTGCCCCTTATCTTAGGAAGGTAGATCTAAGAAATTATACAAAATATCAGGAACTATCTTCGGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGACAGTGTGGTTCCCATAGAGTTCCAGGAAAAGAAATGTTGAGTGAGAGTAAGCTGAGGGACCTTCTGCATGGTTCAGAATATGTCGTGACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGAGATGTACCATGGGAGATGTTCATTGACACTTGCAAAAGGTTGAAAATCATGAAGGGTTCCGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAGGTCCAAAAGCAGGAGTTAG 1053 0.4615 MSPPLLVTEEEGQSKVSSSIVASASSQSLDCFSQNGIELKERNYMGLSDCSSVDSSSPSVPSFSHEKKENLNLKATELRLGLPGSQSPERNPDLYSLSSAKLDEKPLFPLLPMKDGISLASQKAVVSGNKRGFADAMDGFPQGKLIGNTGMGVMLSPTRTGAQPTAVREIQSKVLQEQPCAANGASISGGAPASKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTKYQELSSALEKMFSCFTLGQCGSHRVPGKEMLSESKLRDLLHGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMERSKSRS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0544 350 ProSiteProfiles PB1 domain profile. 230 334 IPR000270 GO:0005515
Lan17g0544 350 SUPERFAMILY CAD & PB1 domains 228 331 - -
Lan17g0544 350 MobiDBLite consensus disorder prediction 1 26 - -
Lan17g0544 350 Gene3D - 227 343 - -
Lan17g0544 350 MobiDBLite consensus disorder prediction 11 26 - -
Lan17g0544 350 PANTHER AUXIN-INDUCED PROTEIN 20 343 - -
Lan17g0544 350 MobiDBLite consensus disorder prediction 48 66 - -
Lan17g0544 350 Pfam AUX/IAA family 76 341 IPR033389 -
Lan17g0544 350 MobiDBLite consensus disorder prediction 48 68 - -
Lan17g0544 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 343 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0544 Lan-Chr17 4350654 4356498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0544 233 340 B3 DNA Binding Superfamily AT4G23980 29.630 1.23e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan17g0544 AUX_IAA 3.8e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0544 K14484 - gmx:547502 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0544 17 4350654 4356498 Lan18g0750 18 12949744 12954008 LSH
Lan17g0544 17 4350654 4356498 Lan6g0512 6 4325656 4329744 LSH