Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan17g0544 | ATGTCTCCACCGCTGCTGGTTACGGAGGAGGAAGGGCAGAGCAAAGTTTCGTCGTCGATTGTAGCGTCTGCATCTTCGCAATCCTTAGACTGTTTCTCCCAAAATGGGATTGAATTGAAGGAAAGAAATTACATGGGATTGTCTGATTGCTCATCAGTGGATAGTTCTAGTCCTAGTGTCCCAAGCTTCTCTCATGAGAAAAAGGAGAACCTGAATTTGAAGGCCACGGAGTTGAGGCTGGGTCTTCCTGGATCACAATCACCCGAAAGGAACCCAGATCTTTACTCTTTAAGCTCGGCAAAACTTGATGAAAAGCCACTGTTCCCTTTGCTTCCTATGAAAGATGGAATCAGCTTGGCATCCCAGAAGGCTGTGGTTTCAGGTAACAAAAGAGGTTTTGCCGATGCCATGGATGGGTTCCCTCAGGGGAAGCTTATTGGGAATACAGGGATGGGTGTAATGCTGTCACCTACACGTACTGGAGCTCAGCCCACTGCAGTGAGAGAAATTCAAAGCAAAGTGTTACAAGAACAACCTTGTGCAGCTAATGGTGCTTCTATCAGTGGTGGTGCTCCGGCTTCTAAGGCACAGGTTGTTGGCTGGCCTCCTATCAGATCATTTAGGAAAAACTCGATGGCCACAACTTCAAAGAACAACGATGAAGTTGATGGAAAACCAGGTCCTGCCGCTCTCTTTGTGAAGGTCAGCATGGATGGTGCCCCTTATCTTAGGAAGGTAGATCTAAGAAATTATACAAAATATCAGGAACTATCTTCGGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGACAGTGTGGTTCCCATAGAGTTCCAGGAAAAGAAATGTTGAGTGAGAGTAAGCTGAGGGACCTTCTGCATGGTTCAGAATATGTCGTGACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGAGATGTACCATGGGAGATGTTCATTGACACTTGCAAAAGGTTGAAAATCATGAAGGGTTCCGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAGGTCCAAAAGCAGGAGTTAG | 1053 | 0.4615 | MSPPLLVTEEEGQSKVSSSIVASASSQSLDCFSQNGIELKERNYMGLSDCSSVDSSSPSVPSFSHEKKENLNLKATELRLGLPGSQSPERNPDLYSLSSAKLDEKPLFPLLPMKDGISLASQKAVVSGNKRGFADAMDGFPQGKLIGNTGMGVMLSPTRTGAQPTAVREIQSKVLQEQPCAANGASISGGAPASKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTKYQELSSALEKMFSCFTLGQCGSHRVPGKEMLSESKLRDLLHGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMERSKSRS* | 351 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan17g0544 | 350 | ProSiteProfiles | PB1 domain profile. | 230 | 334 | IPR000270 | GO:0005515 | |
Lan17g0544 | 350 | SUPERFAMILY | CAD & PB1 domains | 228 | 331 | - | - | |
Lan17g0544 | 350 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lan17g0544 | 350 | Gene3D | - | 227 | 343 | - | - | |
Lan17g0544 | 350 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
Lan17g0544 | 350 | PANTHER | AUXIN-INDUCED PROTEIN | 20 | 343 | - | - | |
Lan17g0544 | 350 | MobiDBLite | consensus disorder prediction | 48 | 66 | - | - | |
Lan17g0544 | 350 | Pfam | AUX/IAA family | 76 | 341 | IPR033389 | - | |
Lan17g0544 | 350 | MobiDBLite | consensus disorder prediction | 48 | 68 | - | - | |
Lan17g0544 | 350 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 20 | 343 | IPR003311 | GO:0005634|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan17g0544 | Lan-Chr17 | 4350654 | 4356498 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan17g0544 | 233 | 340 | B3 DNA Binding Superfamily | AT4G23980 | 29.630 | 1.23e-07 | 51.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX or IAA | Lan17g0544 | AUX_IAA | 3.8e-89 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan17g0544 | K14484 | - | gmx:547502 | 541.962 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan17g0544 | 17 | 4350654 | 4356498 | Lan18g0750 | 18 | 12949744 | 12954008 | LSH | |
Lan17g0544 | 17 | 4350654 | 4356498 | Lan6g0512 | 6 | 4325656 | 4329744 | LSH |