Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0539 ATGGGAGATGTGGCTAAGGACCTTACAGCAGGGACTGTTGGAGGGGCAGCACAACTAATAACTGGACACCCCTTTGACACAATCAAGGTCAAGCTCCAAAGCCAGCCTATACCACTCCCTGGCCAGCCTCCCAAGTATTCTGGTGCAATTGATGCAGTCAAGCAGACAATAGCGGCCGAAGGCCCGAGGGGTTTATACAAAGGTATGGGAGCTCCACTTGCTACGGTGGCTGCTTTAAATGCTGTCCTTTTCTCGGTAAGGGGACAAATGGAGGCATTGTTGAGATCCCATCCTGGTGCCCCTCTCACTATAAGTCAACAGGTTGTTGCTGGAGCTGGAGCCGGAGTTGCTGTTTCCCTTCTAGCTTGCCCTACGGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCCCTCACTAGTTCTGCTACAGCTGCAGTAACATTGAAATATGGAGGACCCATGGATGTGGCCAAACAAGTTCTGAAGTCAGAAGGAGGCATAAAAGGACTTTTCAAGGGCTTGGTTCCCACTATGGCGCGTGAAATACCAGGAAATGCTGCTATGTTTGGTGTATATGAAGCATTAAAGCAATATCTTGCAGGAGGCTCTGATACCTCAGGACTAGGTAGAGGTTCTCTTATTGTTGCTGGAGGCTTGGCTGGTGCTTCCTTTTGGGTCATGGTTTACCCAACTGATGTTGTTAAGAGTGTGATTCAAGTGGATGATTATAAAAGTCCAAAGTTTTCTGGTTCAGTTGATGCATTCAGAAAGATAAGATCTAGTGAAGGGTTTAAAGGCCTTTATAAGGGTTTTGCTCCTGCAATGGCCAGAAGTATTCCTGCAAATTCAGCATGCTTCTTGGCTTATGAGATTACAAGATCAGCTCTGTGA 891 0.4691 MGDVAKDLTAGTVGGAAQLITGHPFDTIKVKLQSQPIPLPGQPPKYSGAIDAVKQTIAAEGPRGLYKGMGAPLATVAALNAVLFSVRGQMEALLRSHPGAPLTISQQVVAGAGAGVAVSLLACPTELIKCRLQAQSALTSSATAAVTLKYGGPMDVAKQVLKSEGGIKGLFKGLVPTMAREIPGNAAMFGVYEALKQYLAGGSDTSGLGRGSLIVAGGLAGASFWVMVYPTDVVKSVIQVDDYKSPKFSGSVDAFRKIRSSEGFKGLYKGFAPAMARSIPANSACFLAYEITRSAL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0539 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
Lan17g0539 296 Pfam Mitochondrial carrier protein 4 95 IPR018108 -
Lan17g0539 296 Pfam Mitochondrial carrier protein 102 200 IPR018108 -
Lan17g0539 296 Pfam Mitochondrial carrier protein 214 295 IPR018108 -
Lan17g0539 296 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 296 - -
Lan17g0539 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Lan17g0539 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
Lan17g0539 296 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 296 - -
Lan17g0539 296 Gene3D Mitochondrial carrier domain 2 296 IPR023395 -
Lan17g0539 296 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0539 Lan-Chr17 4299502 4307472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0539 21 296 Antiporters AT1G79900 34.276 5.40e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0539 K15109 - vvi:100257503 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0539 17 4299502 4307472 Lan6g0508 6 4271566 4274844 LSH