Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0535 ATGAATCTCTGGACCGACGACAACTCCTCCGTCATGGAGGCTTTTATGTCCACTACTTCCTCCTCCGATCTCTCTTCTCTCTGGCCACCTCCTACGCCGTCACTTCCACCACAACAACCACCACCACCACCACACCAACAACCCCTTTTTAATCAAGACACACTCCAGCAACGTCTCCAAGCTCTCATCGAAGGCCATGCCACTCACATCTGGACCTATGCCATATTCTGGCAATCCTCTTATGATTATTCCTCTTCCTCCACTCTCCTCGCTTGGGGCGATGGTTACTATAAAGGCGATGATGACAAATCCAAATCCAAATCAAAACCCAACAATAATAACACCAAAAAGACTTCATCTGCAGAACAAAACCACCGGAAGAAAGTGCTTCGCGAACTGAACTCTCTCATCTCAGGCTCTTCAAATGAAAACGATACAGTAGATGAAGAAGTTACAGATACTGAGTGGTTCTTCCTTGTTTCGATGACTCAGTCATTTGTTAACGGTTCTGAGTTACCGGGTCAAGCTTTCTTCAACTCGACCCCGGTTTGGGTCACCGGTTCGGAGCGTCTAGCTGGATCGGCTTGTGAGAGGGCTAGACAGGCGCAGGTTTTTGGGCTTCAAACGATTGTTTGTATACCCGCGGCGAATGGGGTTGTGGAACTGGGGTCCACTGAAATGGTTTTCCAGAACCCTGATCTAATGAACAAGGTAAGATTTTTGTTCAATTTCAACAATAACAATAACAATCATGATGTGGGTTCATGGCCCTTTACCGCTAGCACAACCACGGATCAGGGTGAGAATGACCCTTCTTCGTTATGGCTCAGTGATCCTGAAATTAGGGATTCTGTGAATACAAACAACACTGTTGTTGCTCCTGTTACTGGTGATGTTTCTGTTTCTATTCCGAGCTTGAACAATAGTCATAGAAACAGTCATCACAATATGGTTGTTCCTAAAACGACACAGCTTGAGACCCCTGGTTCTAGTACTTTAACGGAAACCCCAAGTGCTGTTAACTTTCCTAATAGGTCAACTCAACAGAAGCAGAATCAGCAGCAACAGCAGAGTTTGTTTTCTAAGGAATTGAATTTTTCTGCTTATGGGTTTGAAGGAAATGGTGTGAAGAATGGGGGCAATCAGCATAGCCACCATTCTCTGAAGCCGGAATCGGGCGAGATTCTGAGCTTCGGGGAGAGCAAGAAGAGTTCTTACATCAACACGAATGAAAATATGTCTCATTTTTTCTCTGGTCAGTCTCAATTTGTTGCTGCTGCTCCTGCTGCGGAGGAGAATAGCAAGAAGAGGAGGTCCCAGACTTCGAGGAGTAGCAATGATGATGGCATGCTTTCGTTCACCTCTGGTGTTGTTTTGCCGGCTTCAACTTCGAATATGAGGTCTAGTGGTGGTGGTGATTCCGACCATTCGGATATTGAAGCTTCTATCGTGAAGGACCCTGAAAGCACTATAGTGGTTGAACCAGAAAAACGGCCCCGAAAAAGAGGCAGGAAACCGGCAAATGGCCGAGAGGAACCATTGAATCATGTTGAAGCAGAGAGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCTCTTCGTGCCGTGGTTCCAAATGTGTCAAAGATGGACAAAGCATCGCTCTTGGGGGATGCCATTTCTTACATTACAGAGCTGAAATCCAAGCTTCAGAACCTAGAATCGGACAAAGATGGTTTGAAGAAGCAATTGGATACAGTGAAGAAGGAACTTGAGAAAACCACCAAAGATTCAGATGCACTACCTCCACTTGACAAGGAATTGAAGATGTTGAATAGTGTCGGAAGCGGTAAGCTGATTGATTTGGATATCGATGTTAAGATTATTGGTTGGGATGCAATGGTAAGGATCCAATGTAGCAAGAAGAATCACCCTGCTGCAAGGTTGATGGCGGCTTTGATGGAATTGGACTTGGATGTCCATCATGCCAGTGTGTCAGTGGTGAATGATTTGATGATCCAACAAGCAACGGTGAAAATGGGAAGCAGGTTTTATACTCAGGAACAGCTACACGTTGCACTGTCGTCCAAATTTGGTGATGGCCAATAA 2091 0.4558 MNLWTDDNSSVMEAFMSTTSSSDLSSLWPPPTPSLPPQQPPPPPHQQPLFNQDTLQQRLQALIEGHATHIWTYAIFWQSSYDYSSSSTLLAWGDGYYKGDDDKSKSKSKPNNNNTKKTSSAEQNHRKKVLRELNSLISGSSNENDTVDEEVTDTEWFFLVSMTQSFVNGSELPGQAFFNSTPVWVTGSERLAGSACERARQAQVFGLQTIVCIPAANGVVELGSTEMVFQNPDLMNKVRFLFNFNNNNNNHDVGSWPFTASTTTDQGENDPSSLWLSDPEIRDSVNTNNTVVAPVTGDVSVSIPSLNNSHRNSHHNMVVPKTTQLETPGSSTLTETPSAVNFPNRSTQQKQNQQQQQSLFSKELNFSAYGFEGNGVKNGGNQHSHHSLKPESGEILSFGESKKSSYINTNENMSHFFSGQSQFVAAAPAAEENSKKRRSQTSRSSNDDGMLSFTSGVVLPASTSNMRSSGGGDSDHSDIEASIVKDPESTIVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQNLESDKDGLKKQLDTVKKELEKTTKDSDALPPLDKELKMLNSVGSGKLIDLDIDVKIIGWDAMVRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLHVALSSKFGDGQ* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0535 696 CDD bHLH_AtAIB_like 508 584 - -
Lan17g0535 696 Gene3D - 503 592 IPR036638 GO:0046983
Lan17g0535 696 MobiDBLite consensus disorder prediction 21 50 - -
Lan17g0535 696 MobiDBLite consensus disorder prediction 490 516 - -
Lan17g0535 696 PANTHER TRANSCRIPTION FACTOR MYC2 32 692 - -
Lan17g0535 696 MobiDBLite consensus disorder prediction 29 48 - -
Lan17g0535 696 SMART finulus 517 566 IPR011598 GO:0046983
Lan17g0535 696 MobiDBLite consensus disorder prediction 374 393 - -
Lan17g0535 696 PANTHER MYC 32 692 IPR045084 GO:0003700|GO:0006355
Lan17g0535 696 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 512 581 IPR036638 GO:0046983
Lan17g0535 696 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 242 IPR025610 -
Lan17g0535 696 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 511 560 IPR011598 GO:0046983
Lan17g0535 696 MobiDBLite consensus disorder prediction 427 516 - -
Lan17g0535 696 MobiDBLite consensus disorder prediction 444 472 - -
Lan17g0535 696 Pfam Helix-loop-helix DNA-binding domain 515 560 IPR011598 GO:0046983
Lan17g0535 696 MobiDBLite consensus disorder prediction 100 125 - -
Lan17g0535 696 Coils Coil 557 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0535 Lan-Chr17 4237933 4240640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0535 1 693 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 51.282 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g0535 bHLH-MYC_N 3.7e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0535 K13422 - gmx:100776289 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0535 17 4237933 4240640 Lan18g0757 18 13015867 13018385 LSH
Lan17g0535 17 4237933 4240640 Lan6g0504 6 4247915 4250274 LSH