Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0534 ATGGCCTCTTCTGACCCCTTCACCGACAAGAACACCGTGTTCCGTAAGCTCAAGGCAAAATCTGAAAATAAGATGTGTTTTGATTGCAATGCAAAGAACCCAACTTGGGCTTCTGTGACCTATGGGATCTTCCTATGCATCGATTGTTCCGCTGCTCATCGCAGTCTCGGCGTGCATATCAGCTTTGTTAGATCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAATAATGAGCTTCGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAGCACGGTTGGACTGATGGTGGTAAAATAGAGGCCAAATATACATCAAGAGCTTCAGAATTATATAAACAAATACTTTCTAAGGAAGTATCTAAAAGTATGGCTGAGGAAGCGGGTTTAGCATCATCTGTTGTTGCTGTCCAGTCTCCACAAGTGGCTAATGGACTTCCTGAAGTTAGGACCAATGAGTTACCAAAAGAAAATAGTCTAGGGAAGCCTGAAACGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATACATTTTCCAGTACTATAAAAAAACCTATTGGTGCCAAAAAAGCTGGGAAGACTGGGGGACTTGGTGCCCGGAAGCTTACTAAAAAGCCAAGTGAGTCTCTATATGAACAGAAGCCAGAAGAACCACCTGCTCCAGTTTCTTCCCCAGCAAACAACAATTTGCCTACTGGACCATCACCACCGTCTCGGTTTGGGTATGTAGAAAATGTCCAGTCATCTGATTCGAATTCTGGAGCGGGGGATACAAAAATGCCTGGTCATGTGTCTGTGCCGAAGTCATCGAGCTTCTTTGCAGACTTTGGAATGGATAGTGGTTTTCCAAAGAAGACTTTGTCAAATTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAATAAAGCTGAAGATTTGGCTGCTCAAGCTACTTTGTCAAAGTTTTCTAGTAAAACTGCTATCTCCAGTGCTGATCTTTTTGGTGACTCGGACTCTTCAATTGATCTTGCTGCTAGTGACCTCATCAACCGGATATCATTCCAGGCACAAGAAGATATCTCTTCCCTCAGAAACATTGCTGGAGAGACTGGGAAGAGACTCAGCTCCTTGGCTTCCACTTTGATGACAGATCTTCAAGATCGAATACTCTAA 1218 0.4278 MASSDPFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHISFVRSTNLDSWSPEQLKIMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRASELYKQILSKEVSKSMAEEAGLASSVVAVQSPQVANGLPEVRTNELPKENSLGKPETPESTSSPRASHTFSSTIKKPIGAKKAGKTGGLGARKLTKKPSESLYEQKPEEPPAPVSSPANNNLPTGPSPPSRFGYVENVQSSDSNSGAGDTKMPGHVSVPKSSSFFADFGMDSGFPKKTLSNSSKVQIQESDEARKKFSNAKSISSSQFFGDQNKAEDLAAQATLSKFSSKTAISSADLFGDSDSSIDLAASDLINRISFQAQEDISSLRNIAGETGKRLSSLASTLMTDLQDRIL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0534 405 Gene3D Arf GTPase activating protein 2 140 IPR038508 -
Lan17g0534 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 405 - -
Lan17g0534 405 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Lan17g0534 405 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
Lan17g0534 405 MobiDBLite consensus disorder prediction 148 265 - -
Lan17g0534 405 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lan17g0534 405 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lan17g0534 405 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
Lan17g0534 405 MobiDBLite consensus disorder prediction 164 184 - -
Lan17g0534 405 MobiDBLite consensus disorder prediction 228 260 - -
Lan17g0534 405 Pfam Putative GTPase activating protein for Arf 12 107 IPR001164 GO:0005096
Lan17g0534 405 CDD ArfGap_ArfGap2_3_like 9 124 - -
Lan17g0534 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lan17g0534 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0534 Lan-Chr17 4219544 4225553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0534 14 92 C2H2 Transcription Factor Family AT4G21160 43.750 1.37e-18 84.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0534 17 4219544 4225553 Lan18g0758 18 13020627 13025254 LSH
Lan17g0534 17 4219544 4225553 Lan6g0502 6 4213018 4218145 LSH