Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0530 ATGGGTGCTGGAGGTCCTGATGAAGATGACAATAGGTGGCCACCATGGTTGAAGCCATTGCTGAAACAAACTTTCTTTGTTCAATGCAAGCAACATGCTGATTCCCACAAGAGTGAATGTAATATGTATTGCTTGGATTGTATGAATGGGTCTCTCTGTTCTCTCTGTCTTATCCATCACAAGGACCATCGTGTTATTCAGATTAGGAGGTCCTCTTACCATGATGTGATTAGGGTTAATGAGATTCAGAAGGTGTTGGATATAACTGGGGTCCAAACCTACATTATCAACAGTGCAAGGGTTGTATTCTTGAATGAAAGGCCTCAGCCAAGGCCTGGAAAAGGTGTCACAAACACATGTGAAGTTTGTGAGCGTAGCCTTCTTGATTCTTACAGGTTCTGTTCGCTTGGTTGCAAGAGAGTTGGAACATCAAAGAATTTCCAGAAGAAGCACTCAGCTATAATGGCATCAGAATCCGAAGATTCATATTGTAGCAGCAGCAGCCATGGCAGACATCTGAACTCTATGGTCCAGAGATTCACACCATCTACACCACCACCAACTTCAGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATACCACACCGTGCCCCAATGGGAGGACTAATCATAGAATATTAG 645 0.4326 MGAGGPDEDDNRWPPWLKPLLKQTFFVQCKQHADSHKSECNMYCLDCMNGSLCSLCLIHHKDHRVIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKRVGTSKNFQKKHSAIMASESEDSYCSSSSHGRHLNSMVQRFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLIIEY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0530 214 Pfam PLATZ transcription factor 69 139 IPR006734 -
Lan17g0530 214 PANTHER - 5 210 - -
Lan17g0530 214 MobiDBLite consensus disorder prediction 177 191 - -
Lan17g0530 214 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 210 - -
Lan17g0530 214 MobiDBLite consensus disorder prediction 177 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0530 Lan-Chr17 4151660 4154112 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lan17g0530 PLATZ 1.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0530 - - ahf:112747407 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0530 17 4151660 4154112 Lan18g0763 18 13086189 13088708 LSH
Lan17g0530 17 4151660 4154112 Lan6g0499 6 4178462 4180712 LSH